Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W98_RS02330 Genome accession   NZ_LR822026
Coordinates   436997..437440 (+) Length   147 a.a.
NCBI ID   WP_179972686.1    Uniprot ID   A0A7U7H0S3
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 431997..442440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS02310 (STHERMO_0484) - 432513..433274 (-) 762 WP_179972684.1 NUDIX domain-containing protein -
  H1W98_RS02315 - 433338..434329 (-) 992 Protein_410 AAA family ATPase -
  H1W98_RS02320 (STHERMO_0487) gdhA 434787..436139 (+) 1353 WP_179972685.1 NADP-specific glutamate dehydrogenase -
  H1W98_RS02325 (STHERMO_0488) - 436397..436807 (+) 411 WP_180482224.1 peptide deformylase -
  H1W98_RS02330 (STHERMO_0489) rcrR 436997..437440 (+) 444 WP_179972686.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W98_RS02335 (STHERMO_0490) rcrP 437444..439258 (+) 1815 WP_179972687.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS02340 (STHERMO_0491) rcrQ 439248..441026 (+) 1779 WP_179972688.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS02345 (STHERMO_0492) - 441183..441620 (+) 438 WP_232086929.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16983.43 Da        Isoelectric Point: 9.3636

>NTDB_id=1131267 H1W98_RS02330 WP_179972686.1 436997..437440(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_967]
MHGKDPFSDFREFINIMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKCVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131267 H1W98_RS02330 WP_179972686.1 436997..437440(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATATTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAGATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTGTGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7H0S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment