Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H1W98_RS02340 Genome accession   NZ_LR822026
Coordinates   439248..441026 (+) Length   592 a.a.
NCBI ID   WP_179972688.1    Uniprot ID   A0A7U7C6J7
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 434248..446026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS02320 (STHERMO_0487) gdhA 434787..436139 (+) 1353 WP_179972685.1 NADP-specific glutamate dehydrogenase -
  H1W98_RS02325 (STHERMO_0488) - 436397..436807 (+) 411 WP_180482224.1 peptide deformylase -
  H1W98_RS02330 (STHERMO_0489) rcrR 436997..437440 (+) 444 WP_179972686.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W98_RS02335 (STHERMO_0490) rcrP 437444..439258 (+) 1815 WP_179972687.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS02340 (STHERMO_0491) rcrQ 439248..441026 (+) 1779 WP_179972688.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS02345 (STHERMO_0492) - 441183..441620 (+) 438 WP_232086929.1 GNAT family acetyltransferase -
  H1W98_RS02350 - 441897..442470 (+) 574 Protein_417 GTP pyrophosphokinase -
  H1W98_RS02355 - 442523..443201 (+) 679 Protein_418 response regulator transcription factor -
  H1W98_RS11320 - 443214..443339 (+) 126 WP_269473098.1 hypothetical protein -
  H1W98_RS11325 (STHERMO_0499) - 443751..444446 (+) 696 Protein_420 sensor histidine kinase -
  H1W98_RS02365 (STHERMO_0500) pyrH 444682..445419 (+) 738 WP_180482223.1 UMP kinase -
  H1W98_RS02370 (STHERMO_0501) frr 445434..445991 (+) 558 WP_024704207.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65084.00 Da        Isoelectric Point: 5.2114

>NTDB_id=1131269 H1W98_RS02340 WP_179972688.1 439248..441026(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_967]
MENKSKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVISVIGPDKLKEITNLITDGITPTKTGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVATITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMFFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGFTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHNQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALIKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTKEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1131269 H1W98_RS02340 WP_179972688.1 439248..441026(+) (rcrQ) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGGAAAATAAGTCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATCGTTGGAGCCATTATTTCAGCTGTTATAAGTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCGACTAAGACGGGGGTTATTCCGGGCATTGATTTAGACAAGGTGGGCAGTATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTGCAAAGTTTTACCGTTGCAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGCCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGTCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCTATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGTTTTTCATCGG
GAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTCGTATCTTTGAATTTTTGGAAGAAAAGGATATGGACGACGAGTCAGTCAAGACAGCAGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTTTACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTTCTTATGAAA
TTCTATAATATCGATCAAGGCCGTATCACTATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATAATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGGGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCCGTGGGTGTTCATCACTTCATCACTACACTTCCAAAAGGTTATGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTATTAAGGATTCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAGATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGAAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7C6J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.074

100

0.681

Multiple sequence alignment