Detailed information NTG1131242

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1X08_RS09610
• Genome accession: NZ_LR822025
• Coordinates: 1877556..1877993 (-)
• Length: 145 a.a.
• NCBI ID: WP_179972343.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_961
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1872556..1882993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X08_RS09585 (STHERMO_2192)	-	1873354..1874016 (-)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-
H1X08_RS11435 (STHERMO_2194)	-	1874113..1874554 (-)	442	Protein_1851	CAAX protease	-
H1X08_RS09590 (STHERMO_2195)	-	1874566..1874763 (-)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H1X08_RS09595 (STHERMO_2196)	-	1875011..1876204 (-)	1194	WP_179972340.1	acetate kinase	-
H1X08_RS09600 (STHERMO_2197)	comYH	1876260..1877216 (-)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H1X08_RS09605 (STHERMO_2198)	comGG	1877267..1877578 (-)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	-
H1X08_RS09610 (STHERMO_2199)	comYF	1877556..1877993 (-)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X08_RS09615 (STHERMO_2200)	comGE	1877977..1878270 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H1X08_RS09620 (STHERMO_2201)	comGD	1878242..1878670 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H1X08_RS09625 (STHERMO_2202)	comYC	1878630..1878956 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X08_RS09630 (STHERMO_2203)	comYB	1878953..1880053 (-)	1101	WP_179973355.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X08_RS09635 (STHERMO_2204)	comGA/cglA/cilD	1879935..1880876 (-)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X08_RS09640 (STHERMO_2205)	-	1880957..1881319 (-)	363	WP_180482294.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16330.76 Da
• Isoelectric Point: 8.4525

>NTDB_id=1131242 H1X08_RS09610 WP_179972343.1 1877556..1877993(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_961]
MYLSSNLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRNFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131242 H1X08_RS09610 WP_179972343.1 1877556..1877993(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGTATCTAAGCAGTAATCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAATAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAATTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae D39	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae R6	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	50	96.552	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	48.227	97.241	0.469
comGF/cglF	Streptococcus mitis SK321	47.518	97.241	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	46.377	95.172	0.441