Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H0513_RS08155 Genome accession   NZ_LR822023
Coordinates   1555506..1556540 (-) Length   344 a.a.
NCBI ID   WP_415669563.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1550506..1561540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS08130 (STHERMO_1824) ilvD 1550773..1552491 (-) 1719 WP_023909890.1 dihydroxy-acid dehydratase -
  H0513_RS08135 (STHERMO_1825) - 1552604..1553785 (+) 1182 WP_179972194.1 NAD(P)/FAD-dependent oxidoreductase -
  H0513_RS08145 (STHERMO_1826) trmB 1554006..1554647 (-) 642 WP_179972195.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0513_RS08150 (STHERMO_1827) ccrZ 1554657..1555448 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H0513_RS08155 (STHERMO_1828) pptB 1555506..1556540 (-) 1035 WP_415669563.1 ABC transporter permease Regulator
  H0513_RS08160 (STHERMO_1829) pptA 1556540..1557271 (-) 732 WP_179972197.1 ABC transporter ATP-binding protein Regulator
  H0513_RS08165 (STHERMO_1830) - 1557336..1557755 (+) 420 WP_179972198.1 HIT family protein -
  H0513_RS08170 (STHERMO_1831) - 1557752..1558060 (+) 309 WP_179972199.1 hypothetical protein -
  H0513_RS08175 (STHERMO_1832) - 1558102..1558833 (-) 732 WP_179972200.1 hypothetical protein -
  H0513_RS08180 (STHERMO_1833) - 1558852..1559487 (-) 636 WP_179972201.1 DUF4230 domain-containing protein -
  H0513_RS08185 (STHERMO_1835) - 1559817..1560992 (+) 1176 WP_179972202.1 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39981.47 Da        Isoelectric Point: 10.6263

>NTDB_id=1131169 H0513_RS08155 WP_415669563.1 1555506..1556540(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_368]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKYYLLVKEEEVLGHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGIIKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1131169 H0513_RS08155 WP_415669563.1 1555506..1556540(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_368]
ATAGCTGAACTTTTTAAGGAGCGTAGCAGACGATTCACTACTCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTACTCCGACATTTTCCAAAGAATC
CATGGGCCATTATTCTTGGCTTACTTGTGCTTTGTCTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGTACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGGCCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTGCTCATCCAGACATTGATTTTTATCTTGGTCGTCCCACTTTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCCTTTTATAAGCAGTCTGGA
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGTCAACAATCAATCTTGAAGTTTTTTTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTATCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTTATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.965

100

0.98

  pptB Streptococcus salivarius strain HSISS4

93.023

100

0.93


Multiple sequence alignment