Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H0513_RS08160 Genome accession   NZ_LR822023
Coordinates   1556540..1557271 (-) Length   243 a.a.
NCBI ID   WP_179972197.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551540..1562271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS08135 (STHERMO_1825) - 1552604..1553785 (+) 1182 WP_179972194.1 NAD(P)/FAD-dependent oxidoreductase -
  H0513_RS08145 (STHERMO_1826) trmB 1554006..1554647 (-) 642 WP_179972195.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0513_RS08150 (STHERMO_1827) ccrZ 1554657..1555448 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H0513_RS08155 (STHERMO_1828) pptB 1555506..1556540 (-) 1035 WP_415669563.1 ABC transporter permease Regulator
  H0513_RS08160 (STHERMO_1829) pptA 1556540..1557271 (-) 732 WP_179972197.1 ABC transporter ATP-binding protein Regulator
  H0513_RS08165 (STHERMO_1830) - 1557336..1557755 (+) 420 WP_179972198.1 HIT family protein -
  H0513_RS08170 (STHERMO_1831) - 1557752..1558060 (+) 309 WP_179972199.1 hypothetical protein -
  H0513_RS08175 (STHERMO_1832) - 1558102..1558833 (-) 732 WP_179972200.1 hypothetical protein -
  H0513_RS08180 (STHERMO_1833) - 1558852..1559487 (-) 636 WP_179972201.1 DUF4230 domain-containing protein -
  H0513_RS08185 (STHERMO_1835) - 1559817..1560992 (+) 1176 WP_179972202.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26898.12 Da        Isoelectric Point: 4.5146

>NTDB_id=1131170 H0513_RS08160 WP_179972197.1 1556540..1557271(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_368]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDEFRQTFGYSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1131170 H0513_RS08160 WP_179972197.1 1556540..1557271(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAGACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCCGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGTTTCGTCAGACCTTTGGCTACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

98.765

100

0.988
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment