Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M744_RS11875 Genome accession   NZ_CP006471
Coordinates   2409225..2409587 (-) Length   120 a.a.
NCBI ID   WP_011242996.1    Uniprot ID   Q31PY3
Organism   Synechococcus elongatus UTEX 2973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2404225..2414587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS11865 (M744_12450) - 2404407..2408627 (-) 4221 WP_011377766.1 GAF domain-containing protein -
  M744_RS11870 (M744_12455) - 2408699..2409127 (-) 429 WP_231621329.1 chemotaxis protein CheW -
  M744_RS11875 (M744_12460) pilH 2409225..2409587 (-) 363 WP_011242996.1 response regulator Machinery gene
  M744_RS11880 (M744_12465) - 2409638..2410864 (-) 1227 WP_231621330.1 response regulator -
  M744_RS14040 - 2411602..2411775 (+) 174 WP_155813980.1 hypothetical protein -
  M744_RS11885 (M744_12475) - 2411891..2414287 (-) 2397 WP_011377764.1 GH116 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13303.36 Da        Isoelectric Point: 4.6952

>NTDB_id=113114 M744_RS11875 WP_011242996.1 2409225..2409587(-) (pilH) [Synechococcus elongatus UTEX 2973]
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=113114 M744_RS11875 WP_011242996.1 2409225..2409587(-) (pilH) [Synechococcus elongatus UTEX 2973]
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGCAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367

Multiple sequence alignment