Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H0514_RS04540 Genome accession   NZ_LR822020
Coordinates   890876..891688 (+) Length   270 a.a.
NCBI ID   WP_179971933.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 885876..896688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS04515 (STHERMO_1017) - 885978..886676 (-) 699 WP_179971938.1 amino acid ABC transporter permease -
  H0514_RS04520 (STHERMO_1018) - 886694..887527 (-) 834 WP_179971937.1 transporter substrate-binding domain-containing protein -
  H0514_RS04525 (STHERMO_1019) - 887539..888306 (-) 768 WP_179973337.1 amino acid ABC transporter ATP-binding protein -
  H0514_RS04530 (STHERMO_1021) vicR 888830..889537 (+) 708 WP_179971935.1 response regulator YycF Regulator
  H0514_RS04535 (STHERMO_1022) vicK 889530..890870 (+) 1341 WP_179971934.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H0514_RS04540 (STHERMO_1023) vicX 890876..891688 (+) 813 WP_179971933.1 MBL fold metallo-hydrolase Regulator
  H0514_RS04545 (STHERMO_1024) - 891748..892109 (+) 362 Protein_850 YbaN family protein -
  H0514_RS04550 (STHERMO_1025) - 892162..893376 (-) 1215 WP_179971932.1 aminoacyltransferase -
  H0514_RS04555 (STHERMO_1026) yidA 893378..894187 (-) 810 WP_179971931.1 sugar-phosphatase -
  H0514_RS04560 - 894395..895259 (+) 865 Protein_853 GNAT family N-acetyltransferase -
  H0514_RS04565 (STHERMO_1029) - 895351..895737 (+) 387 WP_002953113.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30116.13 Da        Isoelectric Point: 5.7792

>NTDB_id=1131091 H0514_RS04540 WP_179971933.1 890876..891688(+) (vicX) [Streptococcus thermophilus isolate STH_CIRM_956]
MTLELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILITHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVNNSQKHVFSRDKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTME
NQLARADFGVGTDFKIFGTSPDTVTPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1131091 H0514_RS04540 WP_179971933.1 890876..891688(+) (vicX) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGACCTTAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACGAGTTTGCTAGCGGAGATTGACCGCGATCCAAGTG
ATCTTGATGCTATCTTAATAACGCATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATCTACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTAATAATAGTCAGAAACA
TGTTTTTTCTCGCGATAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCG
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATGTTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCCACATGACGATGGAA
AATCAGCTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGTGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

98.889

0.756

Multiple sequence alignment