Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0510_RS06565 Genome accession   NZ_LR822019
Coordinates   1258588..1260081 (-) Length   497 a.a.
NCBI ID   WP_002946410.1    Uniprot ID   Q5M3H4
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253588..1265081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS06535 (STHERMO_1444) - 1253719..1254096 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0510_RS06540 (STHERMO_1445) - 1254101..1254799 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0510_RS06545 (STHERMO_1446) - 1254811..1255596 (+) 786 WP_179966723.1 ABC transporter permease -
  H0510_RS06550 (STHERMO_1447) amiF 1255645..1256574 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  H0510_RS06555 (STHERMO_1448) amiE 1256567..1257652 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0510_RS06560 (STHERMO_1449) amiD 1257662..1258588 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0510_RS06565 (STHERMO_1450) amiC 1258588..1260081 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  H0510_RS06570 (STHERMO_1451) amiA3 1260143..1262110 (-) 1968 WP_179966724.1 peptide ABC transporter substrate-binding protein Regulator
  H0510_RS06575 - 1262315..1262505 (-) 191 Protein_1255 IS3 family transposase -
  H0510_RS06580 (STHERMO_1452) - 1262499..1262909 (-) 411 Protein_1256 ATP-binding cassette domain-containing protein -
  H0510_RS06585 (STHERMO_1453) - 1262941..1263255 (-) 315 Protein_1257 TatD family hydrolase -
  H0510_RS06590 (STHERMO_1454) - 1263602..1264807 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55751.62 Da        Isoelectric Point: 10.0618

>NTDB_id=1131037 H0510_RS06565 WP_002946410.1 1258588..1260081(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_772]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1131037 H0510_RS06565 WP_002946410.1 1258588..1260081(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTACCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

100

100

1
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974

Multiple sequence alignment