Detailed information NTG1131036

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H0510_RS06560
• Genome accession: NZ_LR822019
• Coordinates: 1257662..1258588 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_772
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1252662..1263588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0510_RS06530 (STHERMO_1443)	-	1252742..1253536 (-)	795	WP_179966722.1	HAD hydrolase family protein	-
H0510_RS06535 (STHERMO_1444)	-	1253719..1254096 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
H0510_RS06540 (STHERMO_1445)	-	1254101..1254799 (+)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
H0510_RS06545 (STHERMO_1446)	-	1254811..1255596 (+)	786	WP_179966723.1	ABC transporter permease	-
H0510_RS06550 (STHERMO_1447)	amiF	1255645..1256574 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
H0510_RS06555 (STHERMO_1448)	amiE	1256567..1257652 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H0510_RS06560 (STHERMO_1449)	amiD	1257662..1258588 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H0510_RS06565 (STHERMO_1450)	amiC	1258588..1260081 (-)	1494	WP_002946410.1	ABC transporter permease	Regulator
H0510_RS06570 (STHERMO_1451)	amiA3	1260143..1262110 (-)	1968	WP_179966724.1	peptide ABC transporter substrate-binding protein	Regulator
H0510_RS06575	-	1262315..1262505 (-)	191	Protein_1255	IS3 family transposase	-
H0510_RS06580 (STHERMO_1452)	-	1262499..1262909 (-)	411	Protein_1256	ATP-binding cassette domain-containing protein	-
H0510_RS06585 (STHERMO_1453)	-	1262941..1263255 (-)	315	Protein_1257	TatD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1131036 H0510_RS06560 WP_002946409.1 1257662..1258588(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_772]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1131036 H0510_RS06560 WP_002946409.1 1257662..1258588(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964