Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   H0510_RS03205 Genome accession   NZ_LR822019
Coordinates   589492..590493 (+) Length   333 a.a.
NCBI ID   WP_179966982.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 584492..595493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS03185 (STHERMO_0671) smpB 585598..586062 (+) 465 WP_002950240.1 SsrA-binding protein SmpB -
  H0510_RS03190 (STHERMO_0672) - 586216..587622 (+) 1407 WP_022096975.1 Cof-type HAD-IIB family hydrolase -
  H0510_RS03195 (STHERMO_0673) - 587624..587989 (+) 366 WP_002950243.1 S1 RNA-binding domain-containing protein -
  H0510_RS03200 (STHERMO_0674) - 588092..589177 (-) 1086 WP_011225703.1 M24 family metallopeptidase -
  H0510_RS03205 (STHERMO_0675) ccpA 589492..590493 (+) 1002 WP_179966982.1 catabolite control protein A Regulator
  H0510_RS03210 (STHERMO_0676) - 590552..590749 (+) 198 WP_011225705.1 hypothetical protein -
  H0510_RS03215 (STHERMO_0677) - 590855..591619 (+) 765 WP_179966983.1 MmcQ/YjbR family DNA-binding protein -
  H0510_RS03220 (STHERMO_0678) - 591634..592749 (+) 1116 WP_002950249.1 glycerate kinase -
  H0510_RS03225 (STHERMO_0679) - 592788..593243 (-) 456 WP_087009787.1 YueI family protein -
  H0510_RS03230 (STHERMO_0680) eno 593451..594755 (+) 1305 WP_011225708.1 surface-displayed alpha-enolase -
  H0510_RS03235 - 594908..595092 (-) 185 Protein_578 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36623.62 Da        Isoelectric Point: 5.8841

>NTDB_id=1131023 H0510_RS03205 WP_179966982.1 589492..590493(+) (ccpA) [Streptococcus thermophilus isolate STH_CIRM_772]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIVNSYFA
TLAKGIDDIATMYKYNIVLASSDDNEDHEVTVIHSLISKQVDGIIFMGHHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKSGLEKNNLIYNEGLVFEAKYSYKDGFELAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVTSYTRPNLSSINHPLYDLGAVSMRMLTKIMHKEELEDKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1131023 H0510_RS03205 WP_179966982.1 589492..590493(+) (ccpA) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGAATACTGATGAAACAATCACAATTTATGATGTAGCGCGTGAAGCTGGAGTATCGATGGCAACTGTTTCTCGTGTTGT
AAATGGTAACAAAAACGTAAAAGAAAACACCCGAAAAAAAGTGCTCGAAGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAAAAAACAACTACTGTAGGAGTTGTCATTCCAAATATTGTAAATAGCTATTTTGCT
ACTCTAGCTAAAGGTATTGATGACATTGCAACCATGTATAAGTATAATATTGTTCTTGCTTCCAGTGATGATAATGAGGA
TCATGAAGTTACAGTCATTCATTCTCTAATTTCTAAACAAGTTGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCAGAGTTCTCTCGTACCCGTACACCGATTGTTCTAGCAGGAACAGTTGATCTCGAACACCAATTACCAAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTACGTTTGGCCGGGTATAAGTCTGGACTTGAAAAGAATAATTTGATCT
ACAACGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGAGTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGCAAATCAGTTCC
AGAAGATTTCGAAATCATCACAAGCAATGATTCACCGGTTACAAGCTACACACGTCCAAACCTTTCTAGTATAAACCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATTATGCATAAGGAAGAACTTGAAGATAAAGACGTT
ATTCTTAATCATGGTCTAACTTTACGCCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

75.976

100

0.76

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547


Multiple sequence alignment