Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0511_RS08195 Genome accession   NZ_LR822017
Coordinates   1614722..1615240 (-) Length   172 a.a.
NCBI ID   WP_179974001.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1609722..1620240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS08175 (STHERMO_1852) - 1611631..1612575 (+) 945 WP_179973999.1 magnesium transporter CorA family protein -
  H0511_RS08180 (STHERMO_1853) - 1612646..1613317 (+) 672 WP_179974000.1 DUF1129 domain-containing protein -
  H0511_RS08185 - 1613434..1614315 (+) 882 Protein_1585 DUF4300 family protein -
  H0511_RS08190 (STHERMO_1855) rpsR 1614441..1614680 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  H0511_RS08195 (STHERMO_1856) ssb 1614722..1615240 (-) 519 WP_179974001.1 single-stranded DNA-binding protein Machinery gene
  H0511_RS08200 (STHERMO_1857) rpsF 1615252..1615542 (-) 291 WP_179974002.1 30S ribosomal protein S6 -
  H0511_RS08205 (STHERMO_1859) - 1615761..1616714 (+) 954 Protein_1589 hypothetical protein -
  H0511_RS08210 (STHERMO_1860) mutY 1617379..1618530 (+) 1152 WP_179974003.1 A/G-specific adenine glycosylase -
  H0511_RS08215 (STHERMO_1862) - 1618881..1619117 (-) 237 WP_232087329.1 hypothetical protein -
  H0511_RS08220 (STHERMO_1863) - 1619211..1619444 (-) 234 WP_179974004.1 hypothetical protein -
  H0511_RS08225 (STHERMO_1864) - 1619431..1619607 (-) 177 WP_179974005.1 hypothetical protein -
  H0511_RS08230 (STHERMO_1865) - 1619608..1619820 (-) 213 WP_232087330.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18738.45 Da        Isoelectric Point: 4.6190

>NTDB_id=1130987 H0511_RS08195 WP_179974001.1 1614722..1615240(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_336]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGDSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1130987 H0511_RS08195 WP_179974001.1 1614722..1615240(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGATTAATAATGTCGTACTTGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAATGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGATTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment