Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   H0511_RS07465 Genome accession   NZ_LR822017
Coordinates   1468430..1469464 (-) Length   344 a.a.
NCBI ID   WP_415669366.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1463430..1474464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS07440 (STHERMO_1671) ilvD 1463697..1465400 (-) 1704 WP_179973940.1 dihydroxy-acid dehydratase -
  H0511_RS07445 (STHERMO_1672) - 1465528..1466709 (+) 1182 WP_179973941.1 NAD(P)/FAD-dependent oxidoreductase -
  H0511_RS07455 (STHERMO_1673) trmB 1466930..1467571 (-) 642 WP_179973942.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0511_RS07460 (STHERMO_1674) ccrZ 1467581..1468372 (-) 792 WP_179973943.1 cell cycle regulator CcrZ -
  H0511_RS07465 (STHERMO_1675) pptB 1468430..1469464 (-) 1035 WP_415669366.1 ABC transporter permease Regulator
  H0511_RS07470 (STHERMO_1676) pptA 1469464..1470195 (-) 732 WP_179972197.1 ABC transporter ATP-binding protein Regulator
  H0511_RS07475 (STHERMO_1677) - 1470260..1470679 (+) 420 WP_179972198.1 HIT family protein -
  H0511_RS07480 (STHERMO_1678) - 1470676..1470984 (+) 309 WP_065972523.1 hypothetical protein -
  H0511_RS07485 (STHERMO_1679) - 1471026..1471757 (-) 732 WP_179973945.1 hypothetical protein -
  H0511_RS07490 (STHERMO_1680) - 1471776..1472411 (-) 636 WP_179973946.1 DUF4230 domain-containing protein -
  H0511_RS07495 (STHERMO_1682) - 1472764..1473939 (+) 1176 WP_179972202.1 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39962.43 Da        Isoelectric Point: 10.5817

>NTDB_id=1130982 H0511_RS07465 WP_415669366.1 1468430..1469464(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_336]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKYYLLVKEEEVLGHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGIIKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKHLINQIVLVMTLIQALCLFDLKFS
LILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1130982 H0511_RS07465 WP_415669366.1 1468430..1469464(-) (pptB) [Streptococcus thermophilus isolate STH_CIRM_336]
ATAGCTGAACTTTTTAAGGAGCGTAGCAGACGATTCACTACTCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTACTCCGACATTTTCCAAAGAATC
CATGGGCCATTATTCTTGGCTTACTTGTGCTTTGTCTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGTACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGGCCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTGCTCATCCAGACATTGATTTTTATCTTGGTCGTCCCACTTTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCCTTTTATAAGCAGTCTGGA
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGTCAACAATCAATCTTGAAGTTTTTTTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTATCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATATTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTAAAGCACTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

97.674

100

0.977

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927


Multiple sequence alignment