Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H0511_RS07470 Genome accession   NZ_LR822017
Coordinates   1469464..1470195 (-) Length   243 a.a.
NCBI ID   WP_179972197.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464464..1475195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS07445 (STHERMO_1672) - 1465528..1466709 (+) 1182 WP_179973941.1 NAD(P)/FAD-dependent oxidoreductase -
  H0511_RS07455 (STHERMO_1673) trmB 1466930..1467571 (-) 642 WP_179973942.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0511_RS07460 (STHERMO_1674) ccrZ 1467581..1468372 (-) 792 WP_179973943.1 cell cycle regulator CcrZ -
  H0511_RS07465 (STHERMO_1675) pptB 1468430..1469464 (-) 1035 WP_415669366.1 ABC transporter permease Regulator
  H0511_RS07470 (STHERMO_1676) pptA 1469464..1470195 (-) 732 WP_179972197.1 ABC transporter ATP-binding protein Regulator
  H0511_RS07475 (STHERMO_1677) - 1470260..1470679 (+) 420 WP_179972198.1 HIT family protein -
  H0511_RS07480 (STHERMO_1678) - 1470676..1470984 (+) 309 WP_065972523.1 hypothetical protein -
  H0511_RS07485 (STHERMO_1679) - 1471026..1471757 (-) 732 WP_179973945.1 hypothetical protein -
  H0511_RS07490 (STHERMO_1680) - 1471776..1472411 (-) 636 WP_179973946.1 DUF4230 domain-containing protein -
  H0511_RS07495 (STHERMO_1682) - 1472764..1473939 (+) 1176 WP_179972202.1 IS256-like element IS1191 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26898.12 Da        Isoelectric Point: 4.5146

>NTDB_id=1130983 H0511_RS07470 WP_179972197.1 1469464..1470195(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_336]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDEFRQTFGYSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1130983 H0511_RS07470 WP_179972197.1 1469464..1470195(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAGACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCCGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGTTTCGTCAGACCTTTGGCTACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

98.765

100

0.988
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment