Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   H0511_RS05320 Genome accession   NZ_LR822017
Coordinates   1024279..1025619 (-) Length   446 a.a.
NCBI ID   WP_179971934.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019279..1030619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS05290 (STHERMO_1173) - 1019412..1019798 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  H0511_RS05295 - 1019890..1020754 (-) 865 Protein_1001 GNAT family N-acetyltransferase -
  H0511_RS05300 (STHERMO_1176) yidA 1020962..1021771 (+) 810 WP_179971931.1 sugar-phosphatase -
  H0511_RS05305 (STHERMO_1177) - 1021773..1022987 (+) 1215 WP_179973777.1 aminoacyltransferase -
  H0511_RS05310 - 1023040..1023401 (-) 362 Protein_1004 YbaN family protein -
  H0511_RS05315 (STHERMO_1178) vicX 1023461..1024273 (-) 813 WP_179971933.1 MBL fold metallo-hydrolase Regulator
  H0511_RS05320 (STHERMO_1179) vicK 1024279..1025619 (-) 1341 WP_179971934.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H0511_RS05325 (STHERMO_1180) vicR 1025612..1026319 (-) 708 WP_179971935.1 response regulator YycF Regulator
  H0511_RS05330 (STHERMO_1182) - 1026843..1027610 (+) 768 WP_179973337.1 amino acid ABC transporter ATP-binding protein -
  H0511_RS05335 (STHERMO_1183) - 1027622..1028455 (+) 834 WP_179971937.1 transporter substrate-binding domain-containing protein -
  H0511_RS05340 (STHERMO_1184) - 1028473..1029171 (+) 699 WP_179971938.1 amino acid ABC transporter permease -
  H0511_RS05345 (STHERMO_1185) - 1029183..1029833 (+) 651 WP_179971939.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50749.99 Da        Isoelectric Point: 5.2550

>NTDB_id=1130970 H0511_RS05320 WP_179971934.1 1024279..1025619(-) (vicK) [Streptococcus thermophilus isolate STH_CIRM_336]
MTSIGLNITSFELALLFTLLFVAFYFIFLAYRDYQQVKNIRKLTKRVKSLMAGNYNEKLRIKGDSELLELANSLNDLSEV
FRLTHENLAQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNLDRETATQMSILDILDGENPYTYSELLSKTPEI
HLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALNE
EIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETDPGKSYEIIRDYPVNSI
WVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGL
GLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLPYDQDAMMVDEWEM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1130970 H0511_RS05320 WP_179971934.1 1024279..1025619(-) (vicK) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGACTAGTATTGGCTTAAATATTACAAGCTTTGAACTAGCCTTACTCTTTACGCTCCTCTTTGTTGCTTTCTATTTCAT
TTTTCTAGCTTATCGTGATTATCAACAAGTCAAAAATATCCGAAAGTTGACTAAGAGAGTCAAATCCCTTATGGCAGGTA
ATTATAATGAAAAATTACGCATAAAGGGAGATTCAGAGCTTTTAGAGCTAGCTAATAGCTTGAATGATTTGTCGGAAGTC
TTTCGTTTGACACATGAAAATCTAGCCCAGGAAAAAAACCGCTTATCATCTGTCCTTTCGTACATGAGTGACGGGGTTAT
TGCGACCAATCGCCTTGGTCAGATTACCATGATTAATAGTACTGCCCAACGCTTGTTGAATTTAGATCGCGAAACTGCGA
CTCAGATGTCTATTTTGGATATATTAGATGGTGAGAATCCCTATACCTATAGTGAATTGTTGTCTAAGACACCCGAAATC
CATCTGTCGCGTCGAGATGCTAACGATGAATTTGTAACGCTACGTGTTAATTTTGCATTAATTCGTAAGGAATCTGGTTT
TATTTCAGGTCTGGTAGCTGTTCTTCATGATGCCACTGAGCAGGAAAAAGAAGAGCGCGAACGCCGTCTTTTCGTGTCAA
ATGTTAGTCACGAATTGCGGACGCCTTTAACTTCTGTGAAATCCTATCTTGAAGCGCTTGATGATGGTGCTCTCAACGAA
GAGATTGCTCCAAACTTTATCAAAGTTTCTTTAGATGAAACCAACCGCATGATGCGTATGATTTCTGACCTCTTGGCATT
ATCTCGAATTGACAATAAGAGCACACAGCTTAATGTTGAAATGACAAACTTTACAGCCTTTATGACCTATATCTTGAATC
GGTTTGGTCAAATTAAGAGTCAAGAAACTGATCCAGGTAAGTCTTATGAAATCATTCGAGATTACCCAGTAAACTCTATT
TGGGTGGAAATTGATACTGATAAGATGACCCAGGTCATAGATAATATACTTAATAATGCCATCAAGTATTCTCCCGATGG
TGGGAAAATTACAGTATCTATGAAAACGACAGATTCTCAGTTGATTGTTTCTATTTCCGACCAAGGTTTAGGAATTCCTA
AAAAAGATTTACCTCTGATTTTTGACCGTTTTTACCGTGTTGATAAGGCCAGAAGTCGTGCTCAGGGTGGAACAGGACTT
GGCTTGTCCATTGCAAAAGAAATTGTTAAACAACATAATGGCTTCATTTGGGCTAAGAGTGAGTATGGTAAGGGGTCAAC
TTTTACAATTGTCCTTCCATATGACCAGGACGCAATGATGGTCGATGAATGGGAGATGTAG

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(37-79)

His Kinase A (phospho-acceptor) domain (HisKA)

(208-272)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-435)

PAS fold (PAS)

(94-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

74.638

92.825

0.693
  micB Streptococcus pneumoniae Cp1015

66.282

97.085

0.644

Multiple sequence alignment