Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | H0502_RS09220 | Genome accession | NZ_LR822013 |
| Coordinates | 1785111..1786067 (+) | Length | 318 a.a. |
| NCBI ID | WP_084831205.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus isolate STH_CIRM_32 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1780111..1791067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0502_RS09180 (STHERMO_2045) | - | 1781008..1781370 (+) | 363 | WP_014608746.1 | DUF1033 family protein | - |
| H0502_RS09185 (STHERMO_2046) | comGA/cglA/cilD | 1781451..1782392 (+) | 942 | WP_014608745.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| H0502_RS09190 (STHERMO_2047) | comYB | 1782274..1783374 (+) | 1101 | WP_120764773.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| H0502_RS09195 (STHERMO_2048) | comYC | 1783371..1783697 (+) | 327 | WP_002946126.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| H0502_RS09200 (STHERMO_2049) | comGD | 1783657..1784085 (+) | 429 | WP_253269448.1 | competence type IV pilus minor pilin ComGD | - |
| H0502_RS09205 (STHERMO_2050) | comGE | 1784057..1784350 (+) | 294 | WP_082309154.1 | competence type IV pilus minor pilin ComGE | - |
| H0502_RS09210 (STHERMO_2051) | comYF | 1784334..1784771 (+) | 438 | WP_082309153.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| H0502_RS09215 (STHERMO_2052) | comGG | 1784749..1785066 (+) | 318 | WP_082309152.1 | competence type IV pilus minor pilin ComGG | - |
| H0502_RS09220 (STHERMO_2053) | comYH | 1785111..1786067 (+) | 957 | WP_084831205.1 | class I SAM-dependent methyltransferase | Machinery gene |
| H0502_RS09225 (STHERMO_2054) | - | 1786123..1787316 (+) | 1194 | WP_179970807.1 | acetate kinase | - |
| H0502_RS09230 (STHERMO_2055) | - | 1787565..1787762 (+) | 198 | WP_014727723.1 | helix-turn-helix transcriptional regulator | - |
| H0502_RS10225 (STHERMO_2056) | - | 1787774..1788049 (+) | 276 | WP_232086463.1 | CAAX protease | - |
| H0502_RS10230 (STHERMO_2057) | - | 1788093..1788431 (+) | 339 | WP_232086462.1 | CPBP family intramembrane glutamic endopeptidase | - |
| H0502_RS09240 (STHERMO_2058) | - | 1788505..1788948 (+) | 444 | WP_084829882.1 | CAAX protease | - |
| H0502_RS09245 (STHERMO_2059) | - | 1789045..1789707 (+) | 663 | WP_011227583.1 | CPBP family intramembrane glutamic endopeptidase | - |
| H0502_RS09250 (STHERMO_2060) | proC | 1789737..1790507 (-) | 771 | WP_179970808.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35871.03 Da Isoelectric Point: 4.7123
>NTDB_id=1130817 H0502_RS09220 WP_084831205.1 1785111..1786067(+) (comYH) [Streptococcus thermophilus isolate STH_CIRM_32]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=1130817 H0502_RS09220 WP_084831205.1 1785111..1786067(+) (comYH) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
69.524 |
99.057 |
0.689 |
| comYH | Streptococcus mutans UA140 |
69.524 |
99.057 |
0.689 |