Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0505_RS08005 Genome accession   NZ_LR822012
Coordinates   1561041..1561559 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1556041..1566559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS07985 (STHERMO_1776) - 1557950..1558894 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  H0505_RS07990 (STHERMO_1777) - 1558965..1559636 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  H0505_RS07995 (STHERMO_1778) - 1559753..1560634 (+) 882 WP_179971054.1 DUF4300 family protein -
  H0505_RS08000 (STHERMO_1779) rpsR 1560760..1560999 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  H0505_RS08005 (STHERMO_1780) ssb 1561041..1561559 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  H0505_RS08010 (STHERMO_1781) rpsF 1561571..1561861 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  H0505_RS08015 (STHERMO_1782) - 1562080..1563033 (+) 954 WP_096811658.1 hypothetical protein -
  H0505_RS08020 (STHERMO_1783) mutY 1563950..1565101 (+) 1152 WP_011226550.1 A/G-specific adenine glycosylase -
  H0505_RS08025 (STHERMO_1786) - 1565428..1565679 (-) 252 WP_011226551.1 hypothetical protein -
  H0505_RS08030 (STHERMO_1787) - 1565782..1566009 (-) 228 WP_179971055.1 hypothetical protein -
  H0505_RS08035 (STHERMO_1788) - 1565996..1566172 (-) 177 WP_179971056.1 hypothetical protein -
  H0505_RS08040 (STHERMO_1789) - 1566173..1566457 (-) 285 WP_179971057.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=1130750 H0505_RS08005 WP_002951905.1 1561041..1561559(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_30]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1130750 H0505_RS08005 WP_002951905.1 1561041..1561559(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment