Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H0505_RS05220 Genome accession   NZ_LR822012
Coordinates   998185..998997 (-) Length   270 a.a.
NCBI ID   WP_179970872.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 993185..1003997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS05195 (STHERMO_1135) - 994122..994508 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  H0505_RS05200 - 994600..995479 (-) 880 Protein_972 GNAT family N-acetyltransferase -
  H0505_RS05205 (STHERMO_1138) yidA 995687..996496 (+) 810 WP_011226081.1 sugar-phosphatase -
  H0505_RS05210 (STHERMO_1139) - 996498..997712 (+) 1215 WP_011227270.1 aminoacyltransferase -
  H0505_RS05215 - 997764..998125 (-) 362 Protein_975 YbaN family protein -
  H0505_RS05220 (STHERMO_1140) vicX 998185..998997 (-) 813 WP_179970872.1 MBL fold metallo-hydrolase Regulator
  H0505_RS05225 (STHERMO_1141) vicK 999003..1000343 (-) 1341 WP_011226083.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H0505_RS05230 (STHERMO_1142) vicR 1000336..1001043 (-) 708 WP_011681206.1 response regulator YycF Regulator
  H0505_RS05235 (STHERMO_1144) - 1001570..1002337 (+) 768 WP_179970873.1 amino acid ABC transporter ATP-binding protein -
  H0505_RS05240 (STHERMO_1145) - 1002349..1003182 (+) 834 WP_179970874.1 transporter substrate-binding domain-containing protein -
  H0505_RS05245 (STHERMO_1146) - 1003200..1003898 (+) 699 WP_065973256.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30030.94 Da        Isoelectric Point: 5.3533

>NTDB_id=1130733 H0505_RS05220 WP_179970872.1 998185..998997(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_30]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFNIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1130733 H0505_RS05220 WP_179970872.1 998185..998997(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAATATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.612

99.259

0.77

Multiple sequence alignment