Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0501_RS08310 Genome accession   NZ_LR822008
Coordinates   1623540..1624058 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1618540..1629058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS08290 (STHERMO_1849) - 1620448..1621392 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  H0501_RS08295 (STHERMO_1850) - 1621463..1622134 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  H0501_RS08300 (STHERMO_1851) - 1622251..1623132 (+) 882 WP_011681623.1 DUF4300 family protein -
  H0501_RS08305 (STHERMO_1852) rpsR 1623259..1623498 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  H0501_RS08310 (STHERMO_1853) ssb 1623540..1624058 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  H0501_RS08315 (STHERMO_1854) rpsF 1624070..1624360 (-) 291 WP_011681624.1 30S ribosomal protein S6 -
  H0501_RS08320 (STHERMO_1855) - 1624579..1625532 (+) 954 WP_011681625.1 hypothetical protein -
  H0501_RS08325 (STHERMO_1857) mutY 1626072..1627223 (+) 1152 WP_011681626.1 A/G-specific adenine glycosylase -
  H0501_RS08330 (STHERMO_1860) - 1627550..1627801 (-) 252 WP_011226551.1 hypothetical protein -
  H0501_RS08335 (STHERMO_1861) - 1627904..1628131 (-) 228 WP_011681629.1 hypothetical protein -
  H0501_RS08340 (STHERMO_1862) - 1628118..1628462 (-) 345 WP_023909938.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=1130517 H0501_RS08310 WP_002951905.1 1623540..1624058(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_18]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1130517 H0501_RS08310 WP_002951905.1 1623540..1624058(-) (ssb) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment