Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   STHERMO_RS05480 Genome accession   NZ_LR822006
Coordinates   1035364..1036176 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030364..1041176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS05455 (STHERMO_1202) - 1031301..1031687 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  STHERMO_RS05460 - 1031779..1032658 (-) 880 Protein_1010 GNAT family N-acetyltransferase -
  STHERMO_RS05465 (STHERMO_1206) yidA 1032866..1033675 (+) 810 WP_011226081.1 sugar-phosphatase -
  STHERMO_RS05470 (STHERMO_1207) - 1033677..1034891 (+) 1215 WP_011227270.1 aminoacyltransferase -
  STHERMO_RS05475 - 1034943..1035304 (-) 362 Protein_1013 YbaN family protein -
  STHERMO_RS05480 (STHERMO_1208) vicX 1035364..1036176 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  STHERMO_RS05485 (STHERMO_1209) vicK 1036182..1037522 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  STHERMO_RS05490 (STHERMO_1210) vicR 1037515..1038222 (-) 708 WP_011227274.1 response regulator YycF Regulator
  STHERMO_RS05495 (STHERMO_1212) - 1038754..1039521 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  STHERMO_RS05500 (STHERMO_1213) - 1039533..1040366 (+) 834 WP_011227276.1 transporter substrate-binding domain-containing protein -
  STHERMO_RS05505 (STHERMO_1214) - 1040384..1041082 (+) 699 WP_179970492.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=1130445 STHERMO_RS05480 WP_011681204.1 1035364..1036176(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_16]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1130445 STHERMO_RS05480 WP_011681204.1 1035364..1036176(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment