Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DENOEST_RS15445 Genome accession   NZ_LR778301
Coordinates   3379511..3380875 (-) Length   454 a.a.
NCBI ID   WP_145771479.1    Uniprot ID   A0A6S6XWL4
Organism   Denitratisoma oestradiolicum strain DSM 16959     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374511..3385875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DENOEST_RS15430 (DENOEST_3247) - 3376747..3377778 (+) 1032 WP_145771477.1 AraC family transcriptional regulator -
  DENOEST_RS15435 (DENOEST_3248) - 3377896..3378672 (-) 777 WP_183148271.1 histone H1-like repetitive region-containing protein -
  DENOEST_RS15440 (DENOEST_3249) ampD 3378975..3379511 (-) 537 WP_145771478.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DENOEST_RS15445 (DENOEST_3250) pilR 3379511..3380875 (-) 1365 WP_145771479.1 sigma-54 dependent transcriptional regulator Regulator
  DENOEST_RS15450 (DENOEST_3251) - 3380859..3382463 (-) 1605 WP_145771480.1 PAS domain-containing sensor histidine kinase -
  DENOEST_RS15455 (DENOEST_3252) - 3382460..3382693 (-) 234 WP_145771481.1 PP0621 family protein -
  DENOEST_RS15460 (DENOEST_3253) - 3382738..3384141 (-) 1404 WP_145771482.1 bifunctional serine/threonine-protein kinase/universal stress protein -
  DENOEST_RS15465 (DENOEST_3254) - 3384290..3385036 (-) 747 WP_145771483.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49952.29 Da        Isoelectric Point: 6.2567

>NTDB_id=1130267 DENOEST_RS15445 WP_145771479.1 3379511..3380875(-) (pilR) [Denitratisoma oestradiolicum strain DSM 16959]
MATNLERASKARLRVLVVDDEADIRELLDLTLARMGLGCDCVGTLAEARRLLAQGSHHLCLTDMRLPDGDGLELVRHIGE
HVPDMPVAVITAHGSAENAVSALKAGAFDYLTKPVSLDQLRALVKSAMELPVAVEQREQIAAPSLLGQSPAMTEARDLIE
RMARSQAPVHITGESGSGKELAARLIHRMGARQQGPFVPVNCGAIPENLMESEFFGYRKGAFTGADADRDGFFQVAQGGT
LFLDEVADLPLSMQVKLLRAIQEKKVRRVGSPGEESVDVRLISATHQNLRRQVEQGRFRQDLQFRLNVLELRMPALRECR
EDIPLLATRVLERLAAQAASDPAPSLTAAALRALSDYPFPGNVRELENILERALALRTTDCIDSGDLNLIPPAENQEVPP
LGQLSLQDHLDRVERQAILEALQKTRFNRTAAARLLGVTFRSLRYRMERLGLND

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1130267 DENOEST_RS15445 WP_145771479.1 3379511..3380875(-) (pilR) [Denitratisoma oestradiolicum strain DSM 16959]
ATGGCAACGAATCTTGAACGCGCGAGCAAGGCCCGGCTGAGGGTGCTGGTCGTAGACGACGAGGCCGATATCCGGGAGCT
GCTGGATCTGACCCTGGCGCGCATGGGCCTGGGCTGCGATTGCGTCGGCACCCTGGCCGAGGCACGGCGCCTGCTGGCCC
AGGGCAGCCACCATCTTTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGCCTGGAACTGGTGCGTCATATCGGCGAG
CATGTGCCGGACATGCCGGTGGCGGTGATCACGGCCCACGGCAGCGCGGAGAATGCCGTCTCGGCCCTCAAGGCGGGCGC
CTTCGACTACCTGACCAAGCCGGTGTCCCTGGACCAGTTGCGCGCCCTGGTCAAAAGCGCAATGGAGCTTCCCGTGGCGG
TGGAACAGCGGGAACAGATCGCCGCCCCATCCCTCTTGGGCCAGTCCCCGGCCATGACGGAGGCGCGGGATTTGATCGAG
CGCATGGCCCGTAGCCAGGCGCCGGTCCATATCACCGGTGAATCCGGCAGCGGCAAGGAACTGGCGGCGCGGCTGATACA
TCGCATGGGTGCCCGCCAACAGGGCCCCTTCGTGCCGGTGAACTGCGGCGCCATTCCGGAAAACCTGATGGAAAGCGAGT
TCTTCGGCTACCGCAAGGGCGCCTTCACCGGTGCGGACGCCGACCGGGACGGTTTTTTCCAGGTGGCCCAGGGCGGCACC
CTGTTCCTCGACGAGGTGGCCGATCTGCCCCTGTCCATGCAGGTCAAATTGCTACGTGCGATCCAGGAAAAGAAAGTGCG
CCGGGTCGGCAGTCCGGGGGAGGAGTCGGTGGATGTCCGCCTGATCAGCGCCACGCACCAGAATCTGCGGCGTCAGGTGG
AGCAGGGTCGTTTCCGTCAGGACTTGCAGTTCCGCCTCAATGTGCTCGAATTGCGCATGCCGGCCCTGCGCGAATGCCGC
GAGGACATCCCCTTGCTGGCGACTCGTGTGCTCGAACGGCTGGCCGCCCAGGCCGCATCGGACCCGGCTCCGTCCCTGAC
CGCCGCCGCCCTCCGGGCATTGTCTGATTATCCCTTCCCGGGCAATGTGCGGGAACTGGAGAACATCCTGGAGCGTGCCC
TGGCCCTGCGCACCACGGACTGCATCGACAGCGGCGACCTCAACCTGATCCCGCCGGCTGAAAATCAGGAAGTCCCGCCC
CTGGGACAACTGTCCCTCCAGGATCACCTGGACCGGGTGGAGCGACAGGCCATCCTGGAAGCGCTGCAAAAGACCCGCTT
CAACCGCACCGCCGCCGCCCGGTTGCTCGGCGTCACCTTCCGTTCCCTGCGCTATCGCATGGAACGGCTTGGACTGAACG
ACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(15-124)

Bacterial regulatory protein, Fis family (HTH_8)

(410-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S6XWL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.296

98.238

0.573
  pilR Acinetobacter baumannii strain A118

46.868

100

0.478

Multiple sequence alignment