Detailed information NTG1130255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DENOEST_RS01420
• Genome accession: NZ_LR778301
• Coordinates: 266687..267541 (+)
• Length: 284 a.a.
• NCBI ID: WP_145771421.1
• Uniprot ID: A0A6S6XX62
• Organism: Denitratisoma oestradiolicum strain DSM 16959
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 261687..272541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DENOEST_RS01400 (DENOEST_0296)	-	262087..262707 (+)	621	WP_145771417.1	lytic transglycosylase domain-containing protein	-
DENOEST_RS01405 (DENOEST_0297)	ffh	262967..264322 (-)	1356	WP_145771418.1	signal recognition particle protein	-
DENOEST_RS01410 (DENOEST_0298)	-	264365..265195 (+)	831	WP_145771419.1	inner membrane protein YpjD	-
DENOEST_RS01415 (DENOEST_0299)	pilC	265470..266687 (+)	1218	WP_145771420.1	type II secretion system F family protein	Machinery gene
DENOEST_RS01420 (DENOEST_0300)	pilD	266687..267541 (+)	855	WP_145771421.1	A24 family peptidase	Machinery gene
DENOEST_RS01425 (DENOEST_0301)	-	267637..267900 (+)	264	WP_145771422.1	FmdB family zinc ribbon protein	-
DENOEST_RS01430 (DENOEST_0302)	-	267902..268522 (+)	621	WP_145771423.1	DUF502 domain-containing protein	-
DENOEST_RS01435 (DENOEST_0303)	aspS	268575..270371 (+)	1797	WP_145771424.1	aspartate--tRNA ligase	-
DENOEST_RS01440 (DENOEST_0304)	-	270449..270775 (+)	327	WP_232096410.1	nucleotidyltransferase domain-containing protein	-
DENOEST_RS01445 (DENOEST_0305)	-	270759..271154 (+)	396	WP_197970479.1	HEPN domain-containing protein	-
DENOEST_RS01450 (DENOEST_0306)	-	271151..271534 (+)	384	WP_332068209.1	ribonuclease domain-containing protein	-
DENOEST_RS01455 (DENOEST_0307)	-	271531..271965 (+)	435	WP_145771425.1	barstar family protein	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30630.33 Da
• Isoelectric Point: 7.1253

>NTDB_id=1130255 DENOEST_RS01420 WP_145771421.1 266687..267541(+) (pilD) [Denitratisoma oestradiolicum strain DSM 16959]
MEELLHYPGYLVGICSLLGLIIGSFLNVVIHRLPKMMENEWARQCAELRGEEAPAIEPLSLSRPASHCPDCGHAISALEN
IPLLSWLLLGGRCRACRKPISPRYPLVEALTGALFALAAWKLGSGWPLVGALFFLAAAVALTFIDFDTQLLPDDITLPLL
WAGLLFNLGGAFTDLSSAVIGAAAGYLSLWLVYWAFKLATGKEGMGHGDFKLLAAIGAWLGWQMLPLTILFSSFVGALVG
ILLIVLARHGRHVPIPFGPYLATAGVIALFWGPALTRAWLGHLQ

Nucleotide

• Length: 855 bp

>NTDB_id=1130255 DENOEST_RS01420 WP_145771421.1 266687..267541(+) (pilD) [Denitratisoma oestradiolicum strain DSM 16959]
ATGGAGGAACTGCTGCATTACCCCGGCTACCTCGTTGGTATTTGTTCCCTGCTGGGCCTGATCATCGGCAGCTTTCTCAA
TGTCGTGATCCATCGACTGCCCAAGATGATGGAGAACGAATGGGCGCGGCAATGCGCCGAGTTGCGCGGTGAGGAAGCCC
CGGCCATCGAGCCCCTGAGCCTTTCCCGGCCGGCCTCCCATTGTCCGGATTGTGGCCACGCCATTTCCGCCCTGGAAAAC
ATTCCCCTGCTGAGCTGGCTGCTGCTGGGGGGGCGCTGCCGGGCCTGCCGGAAACCCATCAGTCCCCGCTATCCCCTGGT
GGAGGCCCTGACTGGTGCCCTTTTCGCTCTGGCCGCCTGGAAGCTGGGGTCGGGCTGGCCCCTGGTTGGCGCCCTGTTTT
TCCTGGCCGCTGCCGTCGCCCTCACTTTCATCGATTTCGACACCCAATTGCTGCCCGACGACATCACCCTGCCCCTGCTC
TGGGCCGGACTGCTGTTCAATCTGGGTGGCGCATTCACCGATCTCTCCAGCGCCGTCATCGGCGCCGCCGCCGGTTACCT
CTCCCTCTGGCTGGTCTATTGGGCCTTCAAGCTGGCTACCGGCAAGGAAGGCATGGGCCATGGTGACTTCAAGCTGCTGG
CGGCCATCGGGGCCTGGCTGGGCTGGCAGATGCTGCCCCTGACCATCCTGTTCTCCTCCTTTGTCGGCGCCCTGGTGGGC
ATCCTGTTGATCGTGCTGGCCCGCCATGGTCGCCATGTTCCCATCCCCTTCGGTCCCTACCTGGCCACCGCCGGGGTCAT
CGCCCTGTTCTGGGGTCCGGCCCTGACCCGGGCCTGGCTGGGCCACTTGCAATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-121)

• Type IV leader peptidase family (Peptidase_A24) (133-241)

3D structure

• AlphaFold DB: A0A6S6XX62

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.595	100	0.535
pilD	Vibrio campbellii strain DS40M4	52.727	96.831	0.511
pilD	Neisseria gonorrhoeae MS11	47.931	100	0.489
pilD	Acinetobacter nosocomialis M2	49.627	94.366	0.468
pilD	Acinetobacter baumannii D1279779	49.254	94.366	0.465