Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAMY6639_RS12450 Genome accession   NZ_CP006058
Coordinates   2554209..2554646 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6639     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2549209..2559646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6639_RS12425 (BAMY6639_13050) - 2550229..2551365 (+) 1137 WP_061861140.1 zinc-dependent alcohol dehydrogenase -
  BAMY6639_RS12430 (BAMY6639_13055) - 2551380..2551814 (+) 435 WP_007409358.1 RDD family protein -
  BAMY6639_RS12435 (BAMY6639_13060) - 2551886..2552209 (+) 324 WP_060675310.1 YckD family protein -
  BAMY6639_RS12440 (BAMY6639_13065) - 2552313..2553749 (+) 1437 WP_061861141.1 glycoside hydrolase family 1 protein -
  BAMY6639_RS12445 (BAMY6639_13070) nin/comJ 2553790..2554188 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  BAMY6639_RS12450 (BAMY6639_13075) nucA/comI 2554209..2554646 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAMY6639_RS12455 (BAMY6639_13080) hxlB 2555004..2555561 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  BAMY6639_RS12460 (BAMY6639_13085) hxlA 2555558..2556193 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  BAMY6639_RS12465 (BAMY6639_13090) - 2556425..2556787 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=112986 BAMY6639_RS12450 WP_003156588.1 2554209..2554646(-) (nucA/comI) [Bacillus amyloliquefaciens UMAF6639]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=112986 BAMY6639_RS12450 WP_003156588.1 2554209..2554646(-) (nucA/comI) [Bacillus amyloliquefaciens UMAF6639]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment