Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   GPW69_RS10615 Genome accession   NZ_LR738724
Coordinates   2188862..2189626 (+) Length   254 a.a.
NCBI ID   WP_074391312.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2183862..2194626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS10580 - 2185160..2185492 (+) 333 WP_024378806.1 helix-turn-helix domain-containing protein -
  GPW69_RS10600 - 2186244..2186927 (-) 684 WP_053867304.1 YoaK family protein -
  GPW69_RS10605 rlmH 2186952..2187431 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GPW69_RS10610 htrA 2187605..2188801 (+) 1197 WP_074391311.1 S1C family serine protease Regulator
  GPW69_RS10615 spo0J 2188862..2189626 (+) 765 WP_074391312.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28947.29 Da        Isoelectric Point: 9.8173

>NTDB_id=1129622 GPW69_RS10615 WP_074391312.1 2188862..2189626(+) (spo0J) [Streptococcus suis isolate 9401240]
MEELRTLNISEIHPNPYQPRIHFDKKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQSEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKILKKKNGSGEIRISF
NDLDEFERIINNLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1129622 GPW69_RS10615 WP_074391312.1 2188862..2189626(+) (spo0J) [Streptococcus suis isolate 9401240]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATAAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ATGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTATCATTTTCAGAAGAAAAGCAATCCGAATGGGTTCAACTCATTTTATCAAAAGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTCTCAAGAAGAAAAACGGGAGCGGAGAAATTCGAATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTAAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.118

100

0.551

Multiple sequence alignment