Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GPW69_RS08680 Genome accession   NZ_LR738724
Coordinates   1778669..1779163 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis isolate 9401240     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1773669..1784163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS08665 - 1776442..1777386 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  GPW69_RS08670 - 1777402..1778058 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  GPW69_RS08675 rpsR 1778398..1778637 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  GPW69_RS08680 ssbA 1778669..1779163 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  GPW69_RS08685 rpsF 1779175..1779465 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  GPW69_RS08690 - 1779637..1780626 (-) 990 WP_014736331.1 lipoate--protein ligase -
  GPW69_RS08695 - 1780710..1782149 (-) 1440 WP_074391682.1 6-phospho-beta-glucosidase -
  GPW69_RS08700 - 1782164..1782766 (-) 603 WP_074391681.1 histidine phosphatase family protein -
  GPW69_RS08705 - 1782778..1783377 (-) 600 WP_074391680.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=1129613 GPW69_RS08680 WP_002942409.1 1778669..1779163(-) (ssbA) [Streptococcus suis isolate 9401240]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1129613 GPW69_RS08680 WP_002942409.1 1778669..1779163(-) (ssbA) [Streptococcus suis isolate 9401240]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment