Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   GPW69_RS07465 Genome accession   NZ_LR738724
Coordinates   1515578..1516582 (-) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1508202..1521361 1515578..1516582 within 0


Gene organization within MGE regions


Location: 1508202..1521361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS07455 - 1512498..1513859 (-) 1362 WP_074391791.1 sensor histidine kinase -
  GPW69_RS07460 - 1513860..1514510 (-) 651 WP_024384330.1 response regulator transcription factor -
  GPW69_RS07465 ccpA 1515578..1516582 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  GPW69_RS07470 - 1516792..1517877 (+) 1086 WP_044692778.1 M24 family metallopeptidase -
  GPW69_RS10805 - 1518049..1518249 (-) 201 WP_269472430.1 LPXTG cell wall anchor domain-containing protein -
  GPW69_RS10950 - 1518341..1521361 (+) 3021 WP_269472422.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=1129607 GPW69_RS07465 WP_004298830.1 1515578..1516582(-) (ccpA) [Streptococcus suis isolate 9401240]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1129607 GPW69_RS07465 WP_004298830.1 1515578..1516582(-) (ccpA) [Streptococcus suis isolate 9401240]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCAA
ATGCTGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAACATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTAGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGTTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGATTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTGTTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAATGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGTTTGAAGGACAACGGAATCG
AGTTCAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCA
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCGCTATACGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584

Multiple sequence alignment