Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GPW69_RS07380 Genome accession   NZ_LR738724
Coordinates   1495468..1496271 (-) Length   267 a.a.
NCBI ID   WP_044681030.1    Uniprot ID   A0A0Z8P090
Organism   Streptococcus suis isolate 9401240     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490468..1501271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS07365 recR 1490954..1491550 (-) 597 WP_002935848.1 recombination mediator RecR -
  GPW69_RS07370 pbp2b 1491559..1493634 (-) 2076 WP_024413929.1 penicillin-binding protein PBP2B -
  GPW69_RS07375 vga(F) 1493726..1495111 (-) 1386 WP_044681027.1 ABC-F type ribosomal protection protein Vga(F) -
  GPW69_RS07380 vicX 1495468..1496271 (-) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator
  GPW69_RS07385 micB 1496278..1497627 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GPW69_RS07390 micA 1497620..1498324 (-) 705 WP_004298854.1 response regulator YycF Regulator
  GPW69_RS07395 - 1498518..1499279 (+) 762 WP_074391798.1 amino acid ABC transporter ATP-binding protein -
  GPW69_RS07400 - 1499290..1500129 (+) 840 WP_074391797.1 transporter substrate-binding domain-containing protein -
  GPW69_RS07405 - 1500144..1500842 (+) 699 WP_074391796.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29615.68 Da        Isoelectric Point: 5.7755

>NTDB_id=1129604 GPW69_RS07380 WP_044681030.1 1495468..1496271(-) (vicX) [Streptococcus suis isolate 9401240]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVILTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1129604 GPW69_RS07380 WP_044681030.1 1495468..1496271(-) (vicX) [Streptococcus suis isolate 9401240]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGTGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGACATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATATTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCACTTGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTGCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8P090

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment