Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GPW48_RS08725 Genome accession   NZ_LR738720
Coordinates   1721367..1721861 (-) Length   164 a.a.
NCBI ID   WP_024417776.1    Uniprot ID   A0AAJ5IUS1
Organism   Streptococcus suis isolate GD-0001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1716367..1726861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS08710 - 1719142..1720086 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  GPW48_RS08715 - 1720102..1720758 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  GPW48_RS08720 rpsR 1721095..1721334 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  GPW48_RS08725 ssbA 1721367..1721861 (-) 495 WP_024417776.1 single-stranded DNA-binding protein Machinery gene
  GPW48_RS08730 rpsF 1721873..1722163 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  GPW48_RS08735 - 1722335..1723324 (-) 990 WP_014736331.1 lipoate--protein ligase -
  GPW48_RS08740 - 1723408..1724847 (-) 1440 WP_024417777.1 6-phospho-beta-glucosidase -
  GPW48_RS10815 - 1724908..1725456 (-) 549 Protein_1652 histidine phosphatase family protein -
  GPW48_RS08745 - 1725468..1726070 (-) 603 WP_002937724.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18130.92 Da        Isoelectric Point: 4.7294

>NTDB_id=1129409 GPW48_RS08725 WP_024417776.1 1721367..1721861(-) (ssbA) [Streptococcus suis isolate GD-0001]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPSQSIPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1129409 GPW48_RS08725 WP_024417776.1 1721367..1721861(-) (ssbA) [Streptococcus suis isolate GD-0001]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTTCACAATCTATACCAAACTTCGCTCGAGAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.573
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment