Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GPW48_RS07160 Genome accession   NZ_LR738720
Coordinates   1401092..1401895 (-) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis isolate GD-0001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1396092..1406895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS07140 - 1396427..1397473 (-) 1047 WP_023369700.1 D-alanine--D-alanine ligase -
  GPW48_RS07145 recR 1397578..1398174 (-) 597 WP_002935848.1 recombination mediator RecR -
  GPW48_RS07150 pbp2b 1398183..1400258 (-) 2076 WP_024405652.1 penicillin-binding protein PBP2B -
  GPW48_RS07155 - 1400350..1400730 (-) 381 Protein_1353 ATP-binding cassette domain-containing protein -
  GPW48_RS07160 vicX 1401092..1401895 (-) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  GPW48_RS07165 micB 1401902..1403251 (-) 1350 WP_024405653.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GPW48_RS07170 micA 1403244..1403948 (-) 705 WP_002935840.1 response regulator YycF Regulator
  GPW48_RS07175 - 1404142..1404903 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  GPW48_RS07180 - 1404914..1405753 (+) 840 WP_023369690.1 transporter substrate-binding domain-containing protein -
  GPW48_RS07185 - 1405768..1406466 (+) 699 WP_015646621.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=1129401 GPW48_RS07160 WP_023369694.1 1401092..1401895(-) (vicX) [Streptococcus suis isolate GD-0001]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1129401 GPW48_RS07160 WP_023369694.1 1401092..1401895(-) (vicX) [Streptococcus suis isolate GD-0001]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764

Multiple sequence alignment