Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FX000_RS22280 Genome accession   NZ_LR698983
Coordinates   3613446..3613814 (-) Length   122 a.a.
NCBI ID   WP_415270438.1    Uniprot ID   -
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3608446..3618814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS18925 - 3608620..3609096 (-) 477 WP_003185711.1 flagellar protein FlgN -
  FX000_RS18930 flgM 3609115..3609381 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  FX000_RS18935 - 3609461..3609880 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  FX000_RS18940 comFC 3609939..3610673 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  FX000_RS18945 - 3610630..3610914 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  FX000_RS18950 comFA 3610969..3612363 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  FX000_RS18955 - 3612484..3613326 (-) 843 WP_003185726.1 DegV family protein -
  FX000_RS22280 degU 3613446..3613814 (-) 369 WP_415270438.1 response regulator transcription factor Regulator
  FX000_RS22600 - 3613794..3613928 (-) 135 Protein_3686 response regulator -
  FX000_RS22285 - 3613914..3614894 (-) 981 Protein_3687 sensor histidine kinase -
  FX000_RS18965 - 3615108..3615746 (+) 639 WP_003185736.1 YigZ family protein -
  FX000_RS18970 - 3615761..3616837 (+) 1077 WP_003185737.1 LCP family protein -
  FX000_RS18975 - 3616922..3617296 (-) 375 WP_025806150.1 hypothetical protein -
  FX000_RS18980 - 3617416..3618480 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13728.76 Da        Isoelectric Point: 9.0277

>NTDB_id=1128910 FX000_RS22280 WP_415270438.1 3613446..3613814(-) (degU) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIRRPLHILTRRECEVLQMLADGKSNRGIG
ESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1128910 FX000_RS22280 WP_415270438.1 3613446..3613814(-) (degU) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACAA
TCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGGA
GACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGGC
GAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAAC
GCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(58-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.361

100

0.984

Multiple sequence alignment