Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FX000_RS18950 Genome accession   NZ_LR698983
Coordinates   3610969..3612363 (-) Length   464 a.a.
NCBI ID   WP_003185720.1    Uniprot ID   A0AB37GV19
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3605969..3617363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS18915 flgL 3606159..3607070 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  FX000_RS18920 flgK 3607081..3608604 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  FX000_RS18925 - 3608620..3609096 (-) 477 WP_003185711.1 flagellar protein FlgN -
  FX000_RS18930 flgM 3609115..3609381 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  FX000_RS18935 - 3609461..3609880 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  FX000_RS18940 comFC 3609939..3610673 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  FX000_RS18945 - 3610630..3610914 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  FX000_RS18950 comFA 3610969..3612363 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  FX000_RS18955 - 3612484..3613326 (-) 843 WP_003185726.1 DegV family protein -
  FX000_RS22280 degU 3613446..3613814 (-) 369 WP_415270438.1 response regulator transcription factor Regulator
  FX000_RS22600 - 3613794..3613928 (-) 135 Protein_3686 response regulator -
  FX000_RS22285 - 3613914..3614894 (-) 981 Protein_3687 sensor histidine kinase -
  FX000_RS18965 - 3615108..3615746 (+) 639 WP_003185736.1 YigZ family protein -
  FX000_RS18970 - 3615761..3616837 (+) 1077 WP_003185737.1 LCP family protein -
  FX000_RS18975 - 3616922..3617296 (-) 375 WP_025806150.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52848.50 Da        Isoelectric Point: 9.9576

>NTDB_id=1128902 FX000_RS18950 WP_003185720.1 3610969..3612363(-) (comFA) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1128902 FX000_RS18950 WP_003185720.1 3610969..3612363(-) (comFA) [Bacillus licheniformis isolate MGYG-HGUT-02357]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTTCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.332

98.707

0.556

Multiple sequence alignment