Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FX000_RS18940 Genome accession   NZ_LR698983
Coordinates   3609939..3610673 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3604939..3615673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS18905 fliW 3605090..3605521 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  FX000_RS18910 - 3605543..3606109 (-) 567 WP_003185702.1 DUF6470 family protein -
  FX000_RS18915 flgL 3606159..3607070 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  FX000_RS18920 flgK 3607081..3608604 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  FX000_RS18925 - 3608620..3609096 (-) 477 WP_003185711.1 flagellar protein FlgN -
  FX000_RS18930 flgM 3609115..3609381 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  FX000_RS18935 - 3609461..3609880 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  FX000_RS18940 comFC 3609939..3610673 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  FX000_RS18945 - 3610630..3610914 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  FX000_RS18950 comFA 3610969..3612363 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  FX000_RS18955 - 3612484..3613326 (-) 843 WP_003185726.1 DegV family protein -
  FX000_RS22280 degU 3613446..3613814 (-) 369 WP_415270438.1 response regulator transcription factor Regulator
  FX000_RS22600 - 3613794..3613928 (-) 135 Protein_3686 response regulator -
  FX000_RS22285 - 3613914..3614894 (-) 981 Protein_3687 sensor histidine kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=1128901 FX000_RS18940 WP_011198352.1 3609939..3610673(-) (comFC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1128901 FX000_RS18940 WP_011198352.1 3609939..3610673(-) (comFC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment