Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FX000_RS13255 Genome accession   NZ_LR698983
Coordinates   2538783..2539076 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2533783..2544076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS13210 tasA 2534165..2534959 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  FX000_RS13215 sipW 2535033..2535617 (-) 585 WP_003183449.1 signal peptidase I SipW -
  FX000_RS13220 tapA 2535614..2536342 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  FX000_RS13225 - 2536619..2536939 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  FX000_RS13230 - 2536963..2537145 (-) 183 WP_003183456.1 YqzE family protein -
  FX000_RS13235 comGG 2537234..2537599 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  FX000_RS13240 comGF 2537612..2538100 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  FX000_RS13245 comGE 2538009..2538356 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  FX000_RS13250 comGD 2538340..2538777 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  FX000_RS13255 comGC 2538783..2539076 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  FX000_RS13260 comGB 2539090..2540124 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  FX000_RS13265 comGA 2540114..2541052 (-) 939 WP_061565980.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  FX000_RS13270 - 2541209..2542048 (-) 840 WP_003183480.1 STAS domain-containing protein -
  FX000_RS13280 - 2542290..2542667 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FX000_RS13285 - 2542876..2543121 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  FX000_RS13290 - 2543159..2543797 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=1128881 FX000_RS13255 WP_003183466.1 2538783..2539076(-) (comGC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1128881 FX000_RS13255 WP_003183466.1 2538783..2539076(-) (comGC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment