Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   FX000_RS13260 Genome accession   NZ_LR698983
Coordinates   2539090..2540124 (-) Length   344 a.a.
NCBI ID   WP_011198115.1    Uniprot ID   -
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534090..2545124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS13210 tasA 2534165..2534959 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  FX000_RS13215 sipW 2535033..2535617 (-) 585 WP_003183449.1 signal peptidase I SipW -
  FX000_RS13220 tapA 2535614..2536342 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  FX000_RS13225 - 2536619..2536939 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  FX000_RS13230 - 2536963..2537145 (-) 183 WP_003183456.1 YqzE family protein -
  FX000_RS13235 comGG 2537234..2537599 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  FX000_RS13240 comGF 2537612..2538100 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  FX000_RS13245 comGE 2538009..2538356 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  FX000_RS13250 comGD 2538340..2538777 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  FX000_RS13255 comGC 2538783..2539076 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  FX000_RS13260 comGB 2539090..2540124 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  FX000_RS13265 comGA 2540114..2541052 (-) 939 WP_061565980.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  FX000_RS13270 - 2541209..2542048 (-) 840 WP_003183480.1 STAS domain-containing protein -
  FX000_RS13280 - 2542290..2542667 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FX000_RS13285 - 2542876..2543121 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  FX000_RS13290 - 2543159..2543797 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  FX000_RS13295 - 2543953..2544126 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  FX000_RS13300 - 2544187..2544501 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39737.95 Da        Isoelectric Point: 9.3543

>NTDB_id=1128882 FX000_RS13260 WP_011198115.1 2539090..2540124(-) (comGB) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MKIKMKWPVREQADLLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1128882 FX000_RS13260 WP_011198115.1 2539090..2540124(-) (comGB) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCACAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.656

93.895

0.532

Multiple sequence alignment