Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FQT45_RS04175 | Genome accession | NZ_LR595858 |
| Coordinates | 847074..847565 (+) | Length | 163 a.a. |
| NCBI ID | WP_077323239.1 | Uniprot ID | A0A4U9XK39 |
| Organism | Streptococcus pseudoporcinus strain NCTC10228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 824934..879200 | 847074..847565 | within | 0 |
Gene organization within MGE regions
Location: 824934..879200
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQT45_RS04045 (NCTC10228_00826) | - | 824934..825323 (-) | 390 | WP_077323457.1 | hypothetical protein | - |
| FQT45_RS04050 (NCTC10228_00827) | - | 825434..826222 (+) | 789 | WP_077323456.1 | glycerophosphodiester phosphodiesterase | - |
| FQT45_RS04055 (NCTC10228_00828) | - | 826238..827764 (-) | 1527 | WP_077323627.1 | IS1182 family transposase | - |
| FQT45_RS04060 (NCTC10228_00829) | - | 827865..828248 (-) | 384 | WP_077323609.1 | hypothetical protein | - |
| FQT45_RS04065 (NCTC10228_00830) | - | 828266..829132 (-) | 867 | WP_077323608.1 | metallophosphoesterase | - |
| FQT45_RS04070 (NCTC10228_00831) | - | 829201..829839 (+) | 639 | WP_077323607.1 | HAD family hydrolase | - |
| FQT45_RS04075 (NCTC10228_00832) | - | 830004..831920 (+) | 1917 | WP_077323606.1 | fructose-1,6-bisphosphatase | - |
| FQT45_RS04080 (NCTC10228_00833) | queG | 832033..833151 (+) | 1119 | WP_077323610.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| FQT45_RS04085 (NCTC10228_00834) | prfB | 833201..834302 (+) | 1102 | WP_100068853.1 | peptide chain release factor 2 | - |
| FQT45_RS04090 (NCTC10228_00835) | ftsE | 834334..835026 (+) | 693 | WP_007892765.1 | cell division ATP-binding protein FtsE | - |
| FQT45_RS04095 (NCTC10228_00836) | ftsX | 835019..835948 (+) | 930 | WP_077323604.1 | permease-like cell division protein FtsX | - |
| FQT45_RS04100 (NCTC10228_00837) | - | 836454..837980 (+) | 1527 | WP_143880461.1 | IS1182 family transposase | - |
| FQT45_RS04105 (NCTC10228_00838) | - | 838240..838437 (-) | 198 | Protein_746 | MBL fold metallo-hydrolase | - |
| FQT45_RS04110 (NCTC10228_00839) | - | 838470..839924 (-) | 1455 | WP_077323227.1 | recombinase family protein | - |
| FQT45_RS04115 (NCTC10228_00840) | - | 840054..840863 (-) | 810 | WP_077323228.1 | hypothetical protein | - |
| FQT45_RS04120 (NCTC10228_00841) | - | 840875..841615 (-) | 741 | WP_077323229.1 | helix-turn-helix domain-containing protein | - |
| FQT45_RS04125 (NCTC10228_00842) | - | 841775..841987 (+) | 213 | WP_077323230.1 | helix-turn-helix domain-containing protein | - |
| FQT45_RS04130 (NCTC10228_00843) | - | 842038..842769 (+) | 732 | WP_077323231.1 | phage antirepressor KilAC domain-containing protein | - |
| FQT45_RS10435 (NCTC10228_00844) | - | 842845..843003 (+) | 159 | WP_172604974.1 | BOW99_gp33 family protein | - |
| FQT45_RS04135 (NCTC10228_00845) | - | 843014..843379 (+) | 366 | WP_077323232.1 | winged helix-turn-helix domain-containing protein | - |
| FQT45_RS04140 (NCTC10228_00847) | - | 843618..843881 (+) | 264 | WP_077323233.1 | hypothetical protein | - |
| FQT45_RS04145 (NCTC10228_00848) | - | 843881..844138 (+) | 258 | WP_077323234.1 | hypothetical protein | - |
| FQT45_RS10440 (NCTC10228_00849) | - | 844148..844291 (+) | 144 | WP_172604975.1 | hypothetical protein | - |
| FQT45_RS10750 (NCTC10228_00850) | - | 844302..844433 (+) | 132 | WP_257617288.1 | hypothetical protein | - |
| FQT45_RS04150 (NCTC10228_00851) | - | 844437..844616 (+) | 180 | WP_000373551.1 | hypothetical protein | - |
| FQT45_RS04155 (NCTC10228_00852) | bet | 844613..845392 (+) | 780 | WP_077323235.1 | phage recombination protein Bet | - |
| FQT45_RS04160 (NCTC10228_00853) | - | 845402..846454 (+) | 1053 | WP_077323236.1 | DUF1351 domain-containing protein | - |
| FQT45_RS04165 (NCTC10228_00854) | - | 846444..846767 (+) | 324 | WP_077323237.1 | hypothetical protein | - |
| FQT45_RS04170 (NCTC10228_00855) | - | 846760..847077 (+) | 318 | WP_077323238.1 | hypothetical protein | - |
| FQT45_RS04175 (NCTC10228_00856) | ssb | 847074..847565 (+) | 492 | WP_077323239.1 | single-stranded DNA-binding protein | Machinery gene |
| FQT45_RS04180 (NCTC10228_00857) | - | 847574..848374 (+) | 801 | WP_077323240.1 | DNA methyltransferase | - |
| FQT45_RS04185 (NCTC10228_00858) | - | 848364..848693 (+) | 330 | WP_077323241.1 | hypothetical protein | - |
| FQT45_RS04190 (NCTC10228_00859) | - | 848690..849118 (+) | 429 | WP_077323242.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FQT45_RS04195 (NCTC10228_00860) | - | 849106..849420 (+) | 315 | WP_077323243.1 | DUF1372 family protein | - |
| FQT45_RS04200 (NCTC10228_00861) | - | 849422..849853 (+) | 432 | WP_077323244.1 | hypothetical protein | - |
| FQT45_RS04205 (NCTC10228_00862) | - | 849864..850109 (+) | 246 | WP_077323245.1 | hypothetical protein | - |
| FQT45_RS04210 (NCTC10228_00863) | - | 850106..850423 (+) | 318 | WP_077323246.1 | hypothetical protein | - |
| FQT45_RS04215 (NCTC10228_00864) | - | 850498..850914 (+) | 417 | WP_077323247.1 | DUF1492 domain-containing protein | - |
| FQT45_RS04220 (NCTC10228_00865) | terS | 851075..851791 (+) | 717 | WP_077323248.1 | phage terminase small subunit | - |
| FQT45_RS04225 (NCTC10228_00866) | - | 851760..853058 (+) | 1299 | WP_077323249.1 | PBSX family phage terminase large subunit | - |
| FQT45_RS04230 (NCTC10228_00867) | - | 853070..854581 (+) | 1512 | WP_306341345.1 | phage portal protein | - |
| FQT45_RS10445 (NCTC10228_00868) | - | 854586..856376 (+) | 1791 | WP_077323251.1 | phage minor capsid protein | - |
| FQT45_RS04240 (NCTC10228_00869) | - | 856379..856561 (+) | 183 | WP_077323252.1 | hypothetical protein | - |
| FQT45_RS04245 (NCTC10228_00870) | - | 856595..856825 (+) | 231 | WP_077323253.1 | hypothetical protein | - |
| FQT45_RS04250 (NCTC10228_00871) | - | 856977..857540 (+) | 564 | WP_077323254.1 | phage scaffolding protein | - |
| FQT45_RS04255 (NCTC10228_00872) | - | 857559..858428 (+) | 870 | WP_077323255.1 | capsid protein | - |
| FQT45_RS10450 (NCTC10228_00873) | - | 858443..858601 (+) | 159 | WP_172604976.1 | hypothetical protein | - |
| FQT45_RS04260 (NCTC10228_00874) | - | 858607..858807 (+) | 201 | WP_077323256.1 | hypothetical protein | - |
| FQT45_RS04265 (NCTC10228_00875) | - | 858823..859230 (+) | 408 | WP_077323257.1 | hypothetical protein | - |
| FQT45_RS04270 (NCTC10228_00876) | - | 859217..859558 (+) | 342 | WP_077323258.1 | putative minor capsid protein | - |
| FQT45_RS04275 (NCTC10228_00877) | - | 859558..859920 (+) | 363 | WP_077323259.1 | minor capsid protein | - |
| FQT45_RS04280 (NCTC10228_00878) | - | 859917..860318 (+) | 402 | WP_077323260.1 | minor capsid protein | - |
| FQT45_RS04285 (NCTC10228_00879) | - | 860319..860774 (+) | 456 | WP_077323261.1 | phage tail tube protein | - |
| FQT45_RS04290 (NCTC10228_00880) | - | 860832..861191 (+) | 360 | WP_077323262.1 | hypothetical protein | - |
| FQT45_RS04295 (NCTC10228_00881) | - | 861193..861792 (+) | 600 | WP_077323263.1 | Gp15 family bacteriophage protein | - |
| FQT45_RS04300 (NCTC10228_00882) | - | 861814..865389 (+) | 3576 | WP_142355114.1 | tape measure protein | - |
| FQT45_RS04305 (NCTC10228_00883) | - | 865389..866885 (+) | 1497 | WP_077323264.1 | distal tail protein Dit | - |
| FQT45_RS04310 (NCTC10228_00884) | - | 866889..870446 (+) | 3558 | WP_077323265.1 | phage tail spike protein | - |
| FQT45_RS04315 (NCTC10228_00885) | - | 870448..872430 (+) | 1983 | WP_077323266.1 | DUF859 domain-containing protein | - |
| FQT45_RS04320 (NCTC10228_00886) | - | 872443..872886 (+) | 444 | WP_077323267.1 | DUF1366 domain-containing protein | - |
| FQT45_RS04325 (NCTC10228_00887) | - | 872867..873085 (+) | 219 | WP_077323268.1 | hypothetical protein | - |
| FQT45_RS04330 (NCTC10228_00888) | - | 873089..873367 (+) | 279 | WP_077323269.1 | hypothetical protein | - |
| FQT45_RS04335 (NCTC10228_00889) | - | 873372..873599 (+) | 228 | WP_077323270.1 | phage holin | - |
| FQT45_RS04340 (NCTC10228_00891) | - | 873728..875173 (+) | 1446 | WP_077323271.1 | peptidoglycan amidohydrolase family protein | - |
| FQT45_RS04345 (NCTC10228_00892) | - | 875271..875705 (-) | 435 | Protein_798 | MBL fold metallo-hydrolase | - |
| FQT45_RS04350 (NCTC10228_00893) | - | 875765..876586 (-) | 822 | WP_077323272.1 | alpha/beta hydrolase | - |
| FQT45_RS04355 (NCTC10228_00894) | - | 876738..879200 (+) | 2463 | WP_077323273.1 | bifunctional DnaQ family exonuclease/ATP-dependent helicase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18028.73 Da Isoelectric Point: 4.8838
>NTDB_id=1128483 FQT45_RS04175 WP_077323239.1 847074..847565(+) (ssb) [Streptococcus pseudoporcinus strain NCTC10228]
MINNVVLVGRMTKDAELRYTPSNVAVATFTLAVNRNRKNENGEREADFINCVIWRQAAENLANWAKKGSLIGIVGSIQTR
NYENQQGQRVYVTEVIANQFHMLESRNQQEQGNSFQNGNNSNSGNFYPGGSPQSEFAGGTQGGYNSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSNVAVATFTLAVNRNRKNENGEREADFINCVIWRQAAENLANWAKKGSLIGIVGSIQTR
NYENQQGQRVYVTEVIANQFHMLESRNQQEQGNSFQNGNNSNSGNFYPGGSPQSEFAGGTQGGYNSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=1128483 FQT45_RS04175 WP_077323239.1 847074..847565(+) (ssb) [Streptococcus pseudoporcinus strain NCTC10228]
ATGATTAACAATGTAGTACTGGTTGGAAGAATGACCAAGGACGCAGAACTCAGGTACACACCCTCTAATGTGGCAGTGGC
AACGTTTACTCTTGCTGTAAACCGCAACCGTAAAAACGAAAATGGAGAACGTGAGGCTGATTTTATTAACTGTGTCATTT
GGAGACAAGCAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCTCATTGATTGGGATTGTAGGTAGTATCCAAACTAGA
AACTACGAAAACCAGCAAGGCCAACGTGTTTATGTGACAGAGGTTATTGCTAATCAGTTTCACATGCTAGAAAGTCGTAA
TCAACAGGAACAAGGCAACTCTTTCCAAAATGGGAACAACTCAAACAGTGGCAATTTCTATCCTGGAGGTTCTCCACAGT
CTGAGTTTGCAGGCGGTACACAAGGAGGTTACAACTCTCCATTTGGGAACTCAAACCCAATGGACATCTCAGATGATGAT
TTGCCTTTCTAG
ATGATTAACAATGTAGTACTGGTTGGAAGAATGACCAAGGACGCAGAACTCAGGTACACACCCTCTAATGTGGCAGTGGC
AACGTTTACTCTTGCTGTAAACCGCAACCGTAAAAACGAAAATGGAGAACGTGAGGCTGATTTTATTAACTGTGTCATTT
GGAGACAAGCAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCTCATTGATTGGGATTGTAGGTAGTATCCAAACTAGA
AACTACGAAAACCAGCAAGGCCAACGTGTTTATGTGACAGAGGTTATTGCTAATCAGTTTCACATGCTAGAAAGTCGTAA
TCAACAGGAACAAGGCAACTCTTTCCAAAATGGGAACAACTCAAACAGTGGCAATTTCTATCCTGGAGGTTCTCCACAGT
CTGAGTTTGCAGGCGGTACACAAGGAGGTTACAACTCTCCATTTGGGAACTCAAACCCAATGGACATCTCAGATGATGAT
TTGCCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.471 |
100 |
0.613 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.814 |
100 |
0.589 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.212 |
69.325 |
0.362 |