Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FQT45_RS03600 Genome accession   NZ_LR595858
Coordinates   723774..724775 (+) Length   333 a.a.
NCBI ID   WP_007893523.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 718774..729775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS03575 (NCTC10228_00725) - 719080..719394 (+) 315 WP_077323088.1 PTS cellobiose transporter subunit IIA -
  FQT45_RS03580 (NCTC10228_00726) - 719424..719942 (+) 519 WP_077323089.1 hypothetical protein -
  FQT45_RS03585 (NCTC10228_00727) celB 719969..721306 (+) 1338 WP_077323090.1 PTS cellobiose transporter subunit IIC -
  FQT45_RS03590 (NCTC10228_00728) - 721369..722457 (+) 1089 WP_077323091.1 DUF871 domain-containing protein -
  FQT45_RS03595 (NCTC10228_00729) - 722514..723599 (-) 1086 WP_077323092.1 aminopeptidase P family protein -
  FQT45_RS03600 (NCTC10228_00730) ccpA 723774..724775 (+) 1002 WP_007893523.1 catabolite control protein A Regulator
  FQT45_RS03605 (NCTC10228_00731) - 724821..726284 (+) 1464 WP_077323093.1 alpha-amylase -
  FQT45_RS03610 (NCTC10228_00732) - 726360..727358 (+) 999 WP_077323094.1 glycosyltransferase family 4 protein -
  FQT45_RS03615 (NCTC10228_00733) - 727360..728694 (+) 1335 WP_007893529.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36648.69 Da        Isoelectric Point: 5.3073

>NTDB_id=1128478 FQT45_RS03600 WP_007893523.1 723774..724775(+) (ccpA) [Streptococcus pseudoporcinus strain NCTC10228]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAVSEVVDILAEKHQNIAFVSGPLIDEINGKVRLSGYKEGLKQNKLDYKEGLVFEANYSYKDGFELAQRVINSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVVEYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKRRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1128478 FQT45_RS03600 WP_007893523.1 723774..724775(+) (ccpA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGAACACAGATGATACTATCACGATTTACGATGTTGCTCGTGAAGCTGGTGTTTCAATGGCAACTGTTAGCCGTGTTGT
AAATGGAAATAAAAACGTTAAAGAAAATACACGTAAGAAAGTATTAGAAGTTATCGATCGTTTGGATTATCGCCCTAATG
CAGTTGCTCGTGGTCTTGCAAGTAAAAAAACAACAACAGTTGGAGTAGTTATTCCTAATATTGCTAACGCCTACTTTTCA
ATCCTTGCTAAGGGAATTGACGACATTGCAGCCATGTATAAATATAACATCGTTTTAGCTTCAAGTGATGAAGACGATGA
TAAAGAAGTTAATGTTGTTAATACCTTATTTGCTAAGCAAGTTGATGGCATTATTTTTATGGGACATCATTTAACTGAGA
AAATTCGTGCAGAATTTTCACGGTCTAGAACGCCAATTGTATTAGCTGGAACTGTCGATTTAGAACATCAATTACCAAGT
GTCAATATCGATTATAAAGCAGCTGTTTCTGAGGTAGTTGATATTTTAGCAGAAAAACATCAAAACATTGCTTTTGTATC
AGGGCCATTAATTGATGAAATCAATGGTAAGGTAAGACTCTCTGGCTATAAAGAAGGCTTGAAGCAAAATAAATTGGACT
ATAAAGAAGGCCTTGTTTTTGAAGCTAACTACTCTTATAAAGATGGCTTTGAGTTAGCACAACGGGTTATCAACTCTGGG
GCAACAGCTGCCTATGTAGGAGAGGATGAACTAGCAGCAGGCTTATTAAACGGTCTCTTTGCAGCAGGTAAGAGTGTTCC
AGAAGACTTTGAAATTATTACAAGTAATGATTCCCCAGTCGTAGAATATACCCGTCCAAATCTAAGTTCAATTAGTCAAC
CTGTGTATGATTTAGGTGCCGTAAGTATGCGTATGTTAACCAAAATCATGAATAAAGAAGAGTTAGAAGAAAAAGAAATT
TTGTTAAATCATGGCATTAAACGTCGTGGCACAACGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.378

100

0.784

  ccpA Streptococcus pneumoniae D39

76.877

100

0.769

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547


Multiple sequence alignment