Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FJH52_RS09795 Genome accession   NZ_LR595848
Coordinates   1938139..1939092 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4559 isolate 4559     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933139..1944092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJH52_RS09770 - 1933901..1934524 (-) 624 WP_000932661.1 hypothetical protein -
  FJH52_RS09775 jag 1934575..1935561 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  FJH52_RS09780 - 1935580..1936404 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  FJH52_RS09785 rnpA 1936379..1936750 (-) 372 WP_000739246.1 ribonuclease P protein component -
  FJH52_RS09790 - 1936898..1938088 (-) 1191 WP_000167755.1 acetate kinase -
  FJH52_RS09795 comYH 1938139..1939092 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  FJH52_RS09800 - 1939153..1939740 (-) 588 Protein_1927 class I SAM-dependent methyltransferase -
  FJH52_RS09805 comGG/cglG 1939877..1940290 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  FJH52_RS09810 comGF/cglF 1940268..1940729 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  FJH52_RS09815 comGE/cglE 1940692..1940994 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  FJH52_RS09820 comGD/cglD 1940957..1941361 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  FJH52_RS09825 comGC/cglC 1941354..1941680 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  FJH52_RS09830 comGB/cglB 1941682..1942698 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  FJH52_RS09835 comGA/cglA/cilD 1942646..1943587 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  FJH52_RS09840 - 1943663..1944028 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=1128355 FJH52_RS09795 WP_000345084.1 1938139..1939092(-) (comYH) [Streptococcus pneumoniae strain 4559 isolate 4559]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1128355 FJH52_RS09795 WP_000345084.1 1938139..1939092(-) (comYH) [Streptococcus pneumoniae strain 4559 isolate 4559]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment