Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | M036_RS12135 | Genome accession | NZ_CP005997 |
| Coordinates | 2358810..2359145 (+) | Length | 111 a.a. |
| NCBI ID | WP_080287687.1 | Uniprot ID | - |
| Organism | Bacillus subtilis TO-A | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2353810..2364145
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M036_RS12115 (M036_12010) | gcvT | 2354402..2355490 (-) | 1089 | WP_003230205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| M036_RS12120 (M036_12015) | hepAA | 2355932..2357605 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| M036_RS12125 (M036_12020) | yqhG | 2357626..2358420 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| M036_RS12130 (M036_12025) | sinI | 2358603..2358776 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| M036_RS12135 (M036_12030) | sinR | 2358810..2359145 (+) | 336 | WP_080287687.1 | transcriptional regulator SinR | Regulator |
| M036_RS12140 (M036_12035) | tasA | 2359238..2360023 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| M036_RS12145 (M036_12040) | sipW | 2360087..2360659 (-) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| M036_RS12150 (M036_12045) | tapA | 2360643..2361404 (-) | 762 | WP_003230180.1 | amyloid fiber anchoring/assembly protein TapA | - |
| M036_RS12155 (M036_12050) | yqzG | 2361676..2362002 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| M036_RS12160 (M036_12055) | spoIITA | 2362044..2362223 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| M036_RS12165 (M036_12060) | comGG | 2362294..2362668 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| M036_RS12170 (M036_12065) | comGF | 2362669..2363052 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| M036_RS12175 (M036_12070) | comGE | 2363078..2363425 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| M036_RS12180 (M036_12075) | comGD | 2363409..2363840 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| M036_RS12185 (M036_12080) | comGC | 2363830..2364126 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13018.67 Da Isoelectric Point: 7.2023
>NTDB_id=112821 M036_RS12135 WP_080287687.1 2358810..2359145(+) (sinR) [Bacillus subtilis TO-A]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDTMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDTMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=112821 M036_RS12135 WP_080287687.1 2358810..2359145(+) (sinR) [Bacillus subtilis TO-A]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATACGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATACGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |