Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGL17_RS02220 Genome accession   NZ_LR594052
Coordinates   420677..421603 (+) Length   308 a.a.
NCBI ID   WP_093959231.1    Uniprot ID   A0A4V0GZ34
Organism   Streptococcus porcinus strain NCTC10924     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 415677..426603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL17_RS02210 (NCTC10924_00444) amiA3 417126..419108 (+) 1983 WP_093959229.1 peptide ABC transporter substrate-binding protein Regulator
  FGL17_RS02215 (NCTC10924_00445) amiC 419178..420677 (+) 1500 WP_093959230.1 ABC transporter permease Regulator
  FGL17_RS02220 (NCTC10924_00446) amiD 420677..421603 (+) 927 WP_093959231.1 oligopeptide ABC transporter permease OppC Regulator
  FGL17_RS02225 (NCTC10924_00447) - 421612..422447 (+) 836 Protein_383 ABC transporter ATP-binding protein -
  FGL17_RS02230 (NCTC10924_00448) amiF 422440..423363 (+) 924 WP_003084166.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34427.29 Da        Isoelectric Point: 7.1552

>NTDB_id=1128122 FGL17_RS02220 WP_093959231.1 420677..421603(+) (amiD) [Streptococcus porcinus strain NCTC10924]
MGTIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVLMLIILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YISPGAEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMLLGVVVGALWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSVRVQVLRYRDLEYNLASQTLGTPIHKIATKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1128122 FGL17_RS02220 WP_093959231.1 420677..421603(+) (amiD) [Streptococcus porcinus strain NCTC10924]
ATGGGAACCATTGACAAAAGTAAATTTGAGTTTGTTGAACTCGACAGTTATGCATCAGAAGTCATTGATGCCCCAGCTTA
CTCATACTGGAAATCTGTTTTTCGTCAGTTCTTTTCACGTAAATCAACTGTATTGATGTTGATTATATTAATTGCAATTA
TTTTAATGAGCTTTATCTATCCTATGTTTGCAAATTATGATTTTGGCGATGTAAGTAATATTAATGATTTTTCAAAACGT
TATATTTCACCAGGCGCTGAGTATTGGTTTGGTACTGATAAAAATGGACAGTCATTATTTGATGGTGTTTGGTATGGTGC
AAGGAATTCTATTTTAATTTCTGTTATTGCAACTATGATTAATATGCTTTTAGGTGTGGTAGTCGGTGCTTTATGGGGTG
TTTCTAAAGCTGTTGATAAAGTTATGATTGAAGTCTATAATGTTATTTCGAACTTGCCACAAATGTTAATTATTATCGTT
TTAACCTACTCTATTGGAGCAGGATTTTGGAATTTGATATTTGCCTTTTGTGTAACAGGTTGGATTGGTATTGCCTATTC
TGTGAGGGTTCAAGTGCTTCGTTATCGTGATTTAGAATATAATTTAGCCAGTCAAACGTTAGGCACACCAATACATAAAA
TTGCAACTAAGAACTTATTGCCACAATTGGTTTCTGTTATTGTATCAATGGTATCTTTGTTACTTCCAGCTTATATTTCT
TCTGAAGCATTCCTATCCTTCTTTGGTTTAGGATTACCACTTTCAGAACCAAGCCTTGGGCGTTTAATTTCTAACTACTC
CTCAAACTTGACAACAAATGCTTATTTATTCTGGATTCCTTTAACCACTCTTATTTTAGTGTCGCTACCTCTTTATATTG
TAGGACAAAACTTAGCTGACGCTAGTGATCCAAGAACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0GZ34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.078

100

0.721
  amiD Streptococcus thermophilus LMD-9

72.078

100

0.721

Multiple sequence alignment