Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL18_RS08775 Genome accession   NZ_LR594046
Coordinates   1821998..1822489 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1816998..1827489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS08760 (NCTC6403_01801) - 1819772..1820716 (+) 945 WP_129556234.1 magnesium transporter CorA family protein -
  FGL18_RS08765 (NCTC6403_01802) - 1820848..1821507 (+) 660 WP_138126468.1 DUF1129 domain-containing protein -
  FGL18_RS08770 (NCTC6403_01803) rpsR 1821641..1821880 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  FGL18_RS08775 (NCTC6403_01804) ssbA 1821998..1822489 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  FGL18_RS08780 (NCTC6403_01805) rpsF 1822511..1822801 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  FGL18_RS11020 (NCTC6403_01807) - 1824326..1824619 (-) 294 WP_003052683.1 hypothetical protein -
  FGL18_RS08790 (NCTC6403_01808) mutY 1824786..1825952 (+) 1167 WP_138126470.1 A/G-specific adenine glycosylase -
  FGL18_RS08795 (NCTC6403_01809) trxA 1826003..1826317 (-) 315 WP_003052691.1 thioredoxin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=1127817 FGL18_RS08775 WP_002993238.1 1821998..1822489(-) (ssbA) [Streptococcus dysgalactiae strain NCTC6403]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1127817 FGL18_RS08775 WP_002993238.1 1821998..1822489(-) (ssbA) [Streptococcus dysgalactiae strain NCTC6403]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGATTTAACAATAACACTTCATCATCGAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment