Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | FGL16_RS00885 | Genome accession | NZ_LR594043 |
| Coordinates | 134780..135733 (+) | Length | 317 a.a. |
| NCBI ID | WP_014735295.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain NCTC10237 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 129780..140733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL16_RS00845 (NCTC10237_00164) | - | 129931..130881 (-) | 951 | WP_014735288.1 | S66 peptidase family protein | - |
| FGL16_RS00850 | comGA | 130967..131918 (+) | 952 | Protein_123 | competence type IV pilus ATPase ComGA | - |
| FGL16_RS00855 (NCTC10237_00167) | comYB | 131830..132867 (+) | 1038 | WP_268739958.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FGL16_RS00860 (NCTC10237_00168) | comYC | 132869..133150 (+) | 282 | WP_014735290.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FGL16_RS00865 (NCTC10237_00169) | comGD | 133131..133538 (+) | 408 | WP_014735291.1 | competence type IV pilus minor pilin ComGD | - |
| FGL16_RS00870 (NCTC10237_00170) | comYE | 133510..133803 (+) | 294 | WP_024405248.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| FGL16_RS00875 (NCTC10237_00171) | comGF/cglF | 133790..134224 (+) | 435 | WP_014735293.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FGL16_RS00880 (NCTC10237_00172) | comGG | 134202..134723 (+) | 522 | WP_014735294.1 | competence type IV pilus minor pilin ComGG | - |
| FGL16_RS00885 (NCTC10237_00173) | comYH | 134780..135733 (+) | 954 | WP_014735295.1 | class I SAM-dependent methyltransferase | Machinery gene |
| FGL16_RS00890 (NCTC10237_00174) | - | 135783..136970 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| FGL16_RS00895 (NCTC10237_00175) | - | 137285..137836 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
| FGL16_RS00900 (NCTC10237_00176) | - | 137892..139148 (+) | 1257 | WP_011921729.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| FGL16_RS00905 (NCTC10237_00177) | pepA | 139195..140256 (-) | 1062 | WP_014735296.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35730.93 Da Isoelectric Point: 4.4696
>NTDB_id=1127615 FGL16_RS00885 WP_014735295.1 134780..135733(+) (comYH) [Streptococcus suis strain NCTC10237]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDCLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDCLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=1127615 FGL16_RS00885 WP_014735295.1 134780..135733(+) (comYH) [Streptococcus suis strain NCTC10237]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGTCAGAAGG
AATTGGATTGCTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCTGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGTCAGAAGG
AATTGGATTGCTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCTGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |