Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FGL06_RS06905 Genome accession   NZ_LR594042
Coordinates   1393134..1394138 (-) Length   334 a.a.
NCBI ID   WP_021142864.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1388134..1399138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS06890 (NCTC8133_01396) thrS 1388420..1390366 (-) 1947 WP_024343725.1 threonine--tRNA ligase -
  FGL06_RS06895 (NCTC8133_01398) - 1390717..1392051 (-) 1335 WP_024343724.1 glycosyltransferase family 4 protein -
  FGL06_RS06900 (NCTC8133_01399) - 1392053..1393051 (-) 999 WP_045797679.1 glycosyltransferase family 4 protein -
  FGL06_RS06905 (NCTC8133_01400) ccpA 1393134..1394138 (-) 1005 WP_021142864.1 catabolite control protein A Regulator
  FGL06_RS06910 (NCTC8133_01401) - 1394479..1395564 (+) 1086 WP_039698006.1 M24 family metallopeptidase -
  FGL06_RS06915 (NCTC8133_01402) - 1395599..1395925 (-) 327 WP_021142867.1 DMT family transporter -
  FGL06_RS06920 (NCTC8133_01403) - 1396053..1396547 (+) 495 WP_021142868.1 NAD(+) diphosphatase -
  FGL06_RS06925 (NCTC8133_01404) - 1396564..1397454 (-) 891 WP_126438029.1 LysR family transcriptional regulator -
  FGL06_RS06930 (NCTC8133_01405) - 1397631..1398359 (+) 729 WP_004232843.1 DUF554 domain-containing protein -
  FGL06_RS06935 (NCTC8133_01406) - 1398541..1398975 (+) 435 WP_039698003.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36727.77 Da        Isoelectric Point: 5.3038

>NTDB_id=1127587 FGL06_RS06905 WP_021142864.1 1393134..1394138(-) (ccpA) [Streptococcus equinus strain NCTC8133]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADVVDILAKNNKDIAFVSGPLIDEINGKVRLAGYKEGLEKNNLSFKEGLVFEANYNYKDGYELAQRVMNSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEIITSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
ILNHGLKLRGTSRQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1127587 FGL06_RS06905 WP_021142864.1 1393134..1394138(-) (ccpA) [Streptococcus equinus strain NCTC8133]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCACGTGAAGCTGGCGTCTCAATGGCAACAGTCAGTCGTGTTGT
AAATGGTAATAAAAATGTAAAGGAAAACACTCGTAAAAAAGTCCTTGAAGTTATTGACCGTTTAGACTATCGTCCAAATG
CAGTTGCTCGTGGTTTGGCAAGTAAGAAAACGACAACTGTTGGTGTTGTTATTCCAAATATCGCTAATAGCTATTTCTCA
ATTTTAGCGAGAGGGATTGATGACATTGCTGCTATGTACAAATATAATATCGTTCTTGCGTCAAGTGATGAAGATGACGA
TAAAGAAGTTAATGTCGTAAACACTTTGTTTGCAAAACAAGTTGATGGTATTATCTTCATGGGTCACCATTTAACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTTCTAGCAGGGACAGTTGATTTAGAACATCAACTTCCAAGT
GTTAATATTGATTACAAAGCTGCTGTAGCAGATGTTGTTGATATTTTAGCTAAAAACAATAAAGATATTGCCTTTGTTTC
AGGACCACTTATTGACGAAATCAATGGTAAAGTTCGTCTTGCTGGTTACAAAGAAGGACTTGAAAAGAACAATCTTTCAT
TCAAAGAAGGACTTGTATTTGAAGCAAACTATAACTACAAAGATGGTTATGAGCTTGCTCAACGTGTGATGAACTCAGGT
GCAACAGCTGCTTATGTAGCTGAAGATGAATTAGCTGCAGGTCTTTTGAACGGCTTGTTTGCTGCAGGTAAAAAAGTTCC
TGAAGACTTTGAAATCATTACAAGTAATGACTCACCAATTACTTCATACACACGTCCAAACCTCAGCTCAATCAGTCAAC
CGGTTTATGACCTTGGAGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAAGAACTTGAAGAAAAAGAAATC
ATTCTTAATCATGGTCTTAAATTACGTGGTACATCACGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.042

100

0.79

  ccpA Streptococcus pneumoniae D39

76.347

100

0.763

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.495

99.102

0.56


Multiple sequence alignment