Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACAty_RS16530 | Genome accession | NZ_CP005986 |
| Coordinates | 2498846..2499058 (-) | Length | 70 a.a. |
| NCBI ID | WP_226830230.1 | Uniprot ID | - |
| Organism | Acidithiobacillus caldus ATCC 51756 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2493846..2504058
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAty_RS12205 (Acaty_c2444) | - | 2494304..2495002 (+) | 699 | WP_004869041.1 | Crp/Fnr family transcriptional regulator | - |
| ACAty_RS12210 (Acaty_c2445) | - | 2495137..2495844 (+) | 708 | WP_004869042.1 | MBL fold metallo-hydrolase | - |
| ACAty_RS12215 (Acaty_c2446) | - | 2495837..2496346 (+) | 510 | WP_004869044.1 | hypothetical protein | - |
| ACAty_RS12220 (Acaty_c2447) | - | 2496480..2497613 (+) | 1134 | WP_004869047.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ACAty_RS12225 (Acaty_c2448) | - | 2497683..2498864 (-) | 1182 | WP_004869048.1 | glycosyltransferase | - |
| ACAty_RS16530 (Acaty_c2449) | pilU | 2498846..2499058 (-) | 213 | WP_226830230.1 | hypothetical protein | Machinery gene |
| ACAty_RS12230 (Acaty_c2450) | - | 2499021..2499617 (-) | 597 | WP_004869052.1 | ATPase, T2SS/T4P/T4SS family | - |
| ACAty_RS12235 (Acaty_c2451) | pilT | 2499626..2500675 (-) | 1050 | WP_004869054.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACAty_RS12240 (Acaty_c2452) | - | 2500746..2501438 (+) | 693 | WP_226047714.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACAty_RS12245 (Acaty_c2453) | proC | 2501435..2502439 (+) | 1005 | WP_238323801.1 | pyrroline-5-carboxylate reductase | - |
| ACAty_RS16535 (Acaty_c2454) | - | 2502382..2502543 (+) | 162 | WP_238323802.1 | YggT family protein | - |
| ACAty_RS12250 (Acaty_c2455) | - | 2502563..2502910 (+) | 348 | WP_004873263.1 | DUF167 domain-containing protein | - |
| ACAty_RS12255 (Acaty_c2456) | bioB | 2502882..2503829 (+) | 948 | WP_004873262.1 | biotin synthase BioB | - |
Sequence
Protein
Download Length: 70 a.a. Molecular weight: 8029.02 Da Isoelectric Point: 4.6881
>NTDB_id=112754 ACAty_RS16530 WP_226830230.1 2498846..2499058(-) (pilU) [Acidithiobacillus caldus ATCC 51756]
MARTNDVGMQTFDQSLLKLYMDGLIHYEDALRGADSQNDLRLAIKMECLRRGLEDPGAQSDGERQWRIQS
MARTNDVGMQTFDQSLLKLYMDGLIHYEDALRGADSQNDLRLAIKMECLRRGLEDPGAQSDGERQWRIQS
Nucleotide
Download Length: 213 bp
>NTDB_id=112754 ACAty_RS16530 WP_226830230.1 2498846..2499058(-) (pilU) [Acidithiobacillus caldus ATCC 51756]
ATGGCACGCACCAACGATGTCGGCATGCAGACCTTTGACCAGTCCCTCCTGAAGCTCTACATGGACGGTCTGATCCATTA
TGAGGACGCTCTGCGCGGGGCGGACTCGCAGAATGACCTGCGCCTTGCCATCAAGATGGAATGCCTGCGTCGTGGCCTCG
AGGATCCCGGCGCGCAGAGCGATGGCGAACGGCAGTGGCGTATCCAGAGCTGA
ATGGCACGCACCAACGATGTCGGCATGCAGACCTTTGACCAGTCCCTCCTGAAGCTCTACATGGACGGTCTGATCCATTA
TGAGGACGCTCTGCGCGGGGCGGACTCGCAGAATGACCTGCGCCTTGCCATCAAGATGGAATGCCTGCGTCGTGGCCTCG
AGGATCCCGGCGCGCAGAGCGATGGCGAACGGCAGTGGCGTATCCAGAGCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
53.968 |
90 |
0.486 |
| pilU | Acinetobacter baylyi ADP1 |
47.761 |
95.714 |
0.457 |
| pilU | Vibrio cholerae strain A1552 |
60 |
64.286 |
0.386 |