Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PFLUOLIPICF7_RS04295 | Genome accession | NZ_CP005975 |
| Coordinates | 940138..941004 (+) | Length | 288 a.a. |
| NCBI ID | WP_010213234.1 | Uniprot ID | A0A1N7TXT8 |
| Organism | Pseudomonas simiae strain PICF7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 935138..946004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFLUOLIPICF7_RS04265 (PFLUOLIPICF7_04310) | - | 935547..936261 (+) | 715 | Protein_857 | nicotinate-nucleotide diphosphorylase | - |
| PFLUOLIPICF7_RS04270 (PFLUOLIPICF7_04315) | - | 936309..936614 (-) | 306 | WP_010213230.1 | DUF6388 family protein | - |
| PFLUOLIPICF7_RS04280 (PFLUOLIPICF7_04325) | - | 936881..938281 (-) | 1401 | WP_042571063.1 | O-antigen ligase family protein | - |
| PFLUOLIPICF7_RS04285 (PFLUOLIPICF7_04330) | - | 938317..938739 (-) | 423 | WP_021491914.1 | pilin | - |
| PFLUOLIPICF7_RS04290 (PFLUOLIPICF7_04335) | pilC | 938933..940141 (+) | 1209 | WP_010213233.1 | type II secretion system F family protein | Machinery gene |
| PFLUOLIPICF7_RS04295 (PFLUOLIPICF7_04340) | pilD | 940138..941004 (+) | 867 | WP_010213234.1 | prepilin peptidase | Machinery gene |
| PFLUOLIPICF7_RS04300 (PFLUOLIPICF7_04345) | coaE | 941001..941624 (+) | 624 | WP_010213235.1 | dephospho-CoA kinase | - |
| PFLUOLIPICF7_RS04305 (PFLUOLIPICF7_04350) | yacG | 941621..941821 (+) | 201 | WP_003188437.1 | DNA gyrase inhibitor YacG | - |
| PFLUOLIPICF7_RS04310 (PFLUOLIPICF7_04355) | - | 941818..942033 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| PFLUOLIPICF7_RS04315 (PFLUOLIPICF7_04360) | - | 942109..942798 (-) | 690 | WP_042571059.1 | energy-coupling factor ABC transporter permease | - |
| PFLUOLIPICF7_RS04320 (PFLUOLIPICF7_04365) | - | 942795..943262 (-) | 468 | WP_042571058.1 | hypothetical protein | - |
| PFLUOLIPICF7_RS04325 (PFLUOLIPICF7_04370) | - | 943366..943995 (+) | 630 | WP_010213242.1 | DUF1780 domain-containing protein | - |
| PFLUOLIPICF7_RS04330 (PFLUOLIPICF7_04375) | - | 944050..944223 (+) | 174 | WP_010213243.1 | DUF3094 family protein | - |
| PFLUOLIPICF7_RS04335 (PFLUOLIPICF7_04380) | - | 944284..945582 (+) | 1299 | WP_042571057.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31642.80 Da Isoelectric Point: 7.9976
>NTDB_id=112720 PFLUOLIPICF7_RS04295 WP_010213234.1 940138..941004(+) (pilD) [Pseudomonas simiae strain PICF7]
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=112720 PFLUOLIPICF7_RS04295 WP_010213234.1 940138..941004(+) (pilD) [Pseudomonas simiae strain PICF7]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.48 |
96.875 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
50.357 |
97.222 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
50.37 |
93.75 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
49.451 |
94.792 |
0.469 |
| pilD | Acinetobacter baumannii D1279779 |
49.084 |
94.792 |
0.465 |