Detailed information NTG0112720

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: LG36_RS04500
• Genome accession: NZ_CP009472
• Coordinates: 918762..921365 (+)
• Length: 867 a.a.
• NCBI ID: WP_038600122.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain AI06
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 913762..926365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG36_RS04485 (LG36_0843)	purF	914961..916423 (+)	1463	Protein_865	amidophosphoribosyltransferase	-
LG36_RS04490 (LG36_0844)	-	916533..917156 (+)	624	WP_038600116.1	NAD-dependent epimerase/dehydratase family protein	-
LG36_RS04495 (LG36_0845)	-	917189..918529 (-)	1341	WP_038600119.1	hypothetical protein	-
LG36_RS04500 (LG36_0846)	clpC	918762..921365 (+)	2604	WP_038600122.1	ATP-dependent chaperone ClpB	Regulator
LG36_RS04505 (LG36_0847)	purM	921550..922572 (+)	1023	WP_173402257.1	phosphoribosylformylglycinamidine cyclo-ligase	-
LG36_RS04510 (LG36_0848)	purN	922601..923149 (+)	549	WP_038600125.1	phosphoribosylglycinamide formyltransferase	-
LG36_RS04515 (LG36_0849)	-	923316..924806 (+)	1491	WP_236620817.1	ABC transporter ATP-binding protein	-
LG36_RS04520 (LG36_0850)	-	924958..925488 (-)	531	WP_038600129.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 867 a.a.
• Molecular weight: 97342.17 Da
• Isoelectric Point: 4.8414

>NTDB_id=112720 LG36_RS04500 WP_038600122.1 918762..921365(+) (clpC) [Lactococcus lactis strain AI06]
MDIEKMTTTMQEALGSAQQIAQVRHHQVIEVPHLWRIFVQPNSFGANFYKDLGIDLDDFTNLIEKEIDKINSVEGSNITY
GQNLSPDLFQVFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTSYLVSHGLTKAKVQAAIEKLRGGDKVTSQNAEETY
KALEKYGVDLVAQVRSGKQDPVIGRDEEIRDVIRVLSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF
SLDMGALIAGAKYRGEFEERLKAVLNEVKKSDGQIILFIDELHTIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDE
YRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSNRYITDRFLPDKAIDLVDEAS
ATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLEIIRGEIAELREENNQLKAQWEAEKKEVGNISEKRNE
LEHARHELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKSDDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGERE
KLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEY
MEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMT
SNVGSQYLLDNVGENGEISEETTENVMAQLRAHFKPEFLNRIDDTILFKPLALEDIKNIIVKMTSQLSHRLEEMDVQLEL
SEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIVTLIDNKIDFDIQKIAE

Nucleotide

• Length: 2604 bp

>NTDB_id=112720 LG36_RS04500 WP_038600122.1 918762..921365(+) (clpC) [Lactococcus lactis strain AI06]
ATGGACATCGAAAAAATGACAACAACGATGCAAGAAGCACTTGGTTCAGCGCAACAAATTGCGCAAGTTCGTCATCACCA
AGTGATTGAAGTTCCACATTTATGGCGAATTTTTGTTCAACCTAATAGTTTTGGGGCGAACTTTTATAAAGATTTAGGGA
TTGACCTAGATGACTTTACAAATTTAATTGAAAAAGAAATTGACAAAATTAATTCAGTAGAAGGTTCAAATATTACTTAT
GGTCAAAACCTAAGTCCAGATTTGTTCCAAGTATTTACTGAAGCAGACAAAATTGCGCAAAAAATGGGCGATGAGTACCT
ATCAACTGAGATTATTCTCCTTGCCCTCTTTGAATTAAAACAAAATCCATTGACCAGTTATTTGGTTAGCCATGGACTAA
CAAAAGCAAAAGTGCAAGCTGCAATTGAAAAATTACGCGGAGGTGATAAAGTGACCAGTCAAAATGCAGAAGAAACATAC
AAAGCACTTGAAAAATATGGGGTAGATCTCGTTGCTCAAGTTAGATCAGGTAAACAAGATCCTGTCATTGGACGTGATGA
AGAAATTCGTGATGTCATTCGAGTGCTTTCTCGTAAAACAAAAAATAACCCCGTTCTTATTGGTGAACCTGGGGTTGGTA
AAACAGCCATTGTTGAAGGATTGGCACAAAGGATTGTCAGAAAAGACGTTCCTGAAAATCTGAAAGATAAAACAATCTTT
TCACTTGATATGGGTGCCCTGATTGCAGGAGCGAAATATCGTGGTGAATTTGAAGAACGTTTGAAAGCAGTCCTTAATGA
AGTGAAAAAATCAGATGGACAAATTATCCTCTTTATTGATGAACTTCATACGATTGTTGGTGCAGGTAAAACAGAAGGTT
CAATGGACGCTGGGAACCTTTTAAAACCAATGCTTGCACGTGGTGAACTCCATTTGATTGGGGCAACTACCTTGGATGAA
TATCGTAAATACATGGAAACAGATAAAGCACTTGAACGTCGTTTCCAAAAGGTATTGGTTACTGAACCTACTGTTGAAGA
TACAATTTCAATCTTGCGTGGTCTTAAAGAACGTTTTGAAATTCACCATGGAGTGACCATTCATGATAATGCTTTAGTCG
CAGCAGCAACCCTTTCAAATCGTTATATTACTGACCGATTTTTACCAGATAAAGCCATTGACTTGGTTGATGAAGCCAGT
GCAACAATTCGTGTAGAAATGAATTCACTCCCAACTGAACTTGACCAAGCTAATCGTCGCTTGATGCAATTAGAAATTGA
AGAAGCGGCCCTCAAAAAAGAACGAGATGATGCTTCTAAGAAACGTCTTGAAATTATACGTGGTGAAATTGCTGAACTTC
GAGAAGAAAATAATCAACTCAAAGCTCAATGGGAAGCTGAGAAAAAAGAAGTCGGCAACATTTCTGAAAAACGAAATGAA
TTAGAACATGCTCGCCACGAATTGGAAGAAGCTCAAAATGAAGGAAACTTAGAAAAAGCAGCAGCCCTTCGTTATGGTAA
AATTCCTGAAATTGAAAAAGAACTCAAAGCTATTGAAGAAAAAGCAAAATCAGATGATTTATCCTTAGTTCAAGAATCAG
TCACTGAGGAACAAATCGCCGAAGTGGTTGGACGTATGACCGGTATTCCAATTACCAAATTGGTTGAAGGTGAACGTGAA
AAATTACTTCATTTACCAGAAACACTGCATCAAAGGGTCGTTGGACAAGATGAAGCGGTTGAAGCCGTATCTGATGCCAT
TATTCGTGCACGTGCAGGAATTCAAGACCCTAATCGTCCACTTGGCTCATTCCTCTTCCTCGGTCCAACTGGGGTAGGTA
AGACCGAACTCGCGAAAGCTTTGGCTGAAAATCTCTTTGATTCAGAAGAACATATGGTTCGGATTGACATGAGTGAATAT
ATGGAAAAACACTCAGTTTCTCGTTTAGTCGGAGCACCTCCAGGATATGTCGGTTATGATGAAGGAGGCCAATTGACTGA
AGCCGTTCGTCGTAATCCTTATACCATCATCTTGCTTGATGAAATCGAAAAAGCACATCCAGATGTCTTCAATATCTTGT
TGCAAGTTTTGGATGACGGTCGATTGACTGACTCTAAAGGTGTTCTCGTTGACTTTAAGAACACAGTATTGATTATGACT
TCAAATGTCGGTTCGCAATATTTGCTGGATAATGTTGGAGAAAATGGTGAAATTTCGGAAGAAACAACTGAAAACGTGAT
GGCTCAACTTCGGGCACATTTCAAACCAGAATTTCTAAATCGGATTGATGATACCATTCTTTTCAAACCATTAGCACTTG
AGGACATTAAGAATATTATCGTTAAAATGACTAGCCAACTTTCACATCGTCTTGAAGAAATGGATGTTCAACTTGAGTTG
AGTGAAGAAGTAAAAGTTTGGATTGCCGAAAATGCTTATGAACCAGCTTATGGTGCGCGTCCACTCAAACGTTATTTGAC
AAAAGTCATCGAAAATCCATTAGCTAAACTGATTATCGGAGGAAAAATTCCACCAAAATCAAAAGTAATTGTAACACTTA
TAGATAACAAGATTGACTTTGATATTCAAAAAATTGCTGAATAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-147)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-851)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-764)

• AAA lid domain (AAA_lid_9) (344-444)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.109	100	0.452
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.724	100	0.415