Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSYRMG_RS23490 Genome accession   NZ_CP005970
Coordinates   5342793..5345009 (+) Length   738 a.a.
NCBI ID   WP_060708806.1    Uniprot ID   -
Organism   Pseudomonas syringae UMAF0158     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5337793..5350009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRMG_RS23475 (PSYRMG_23880) - 5340132..5340755 (+) 624 WP_003368376.1 glutathione S-transferase -
  PSYRMG_RS23480 (PSYRMG_23885) - 5340939..5341871 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYRMG_RS23485 (PSYRMG_23890) - 5341868..5342656 (+) 789 WP_003368378.1 ABC transporter permease -
  PSYRMG_RS23490 (PSYRMG_23895) comA 5342793..5345009 (+) 2217 WP_060708806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYRMG_RS23495 (PSYRMG_23900) exbB 5345052..5345768 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYRMG_RS23500 (PSYRMG_23905) - 5345765..5346196 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYRMG_RS23505 (PSYRMG_23910) lpxK 5346196..5347191 (+) 996 WP_060708807.1 tetraacyldisaccharide 4'-kinase -
  PSYRMG_RS23510 (PSYRMG_23915) - 5347209..5347394 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYRMG_RS23515 (PSYRMG_23920) kdsB 5347391..5348155 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYRMG_RS23520 (PSYRMG_23925) murB 5348190..5349209 (+) 1020 WP_060708808.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80297.56 Da        Isoelectric Point: 10.6635

>NTDB_id=112711 PSYRMG_RS23490 WP_060708806.1 5342793..5345009(+) (comA) [Pseudomonas syringae UMAF0158]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGATSRRARLPARIRVAWYGGQPVSSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSNTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGIPVRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLGPQLDARLCESGARWKWDGVVFSTWRWEQGPNGNPASCILSVDAGGERLLLAGDIDVNAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=112711 PSYRMG_RS23490 WP_060708806.1 5342793..5345009(+) (comA) [Pseudomonas syringae UMAF0158]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGTTGCCGCCGACCTGGCTATT
GCTGTTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCACTGGCGTTGTTCCTGCTCGGTTTCACTT
GGGCCTGCGTGTCGGCGCAGTGGGCGTTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTACCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGTGCCACGTCACGACGTGCCAGGCT
GCCCGCGCGAATCAGGGTGGCCTGGTACGGCGGCCAGCCGGTGAGCAGCGGCGAGCGCTGGCGTATGGCGGTCAAACTCA
AGCGACCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGTGGTCTGGCAGCGCTGGTGCTGGGTGATGGCTCAGGGCTATCGAACACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGTCAGCACATCGGGTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCGCGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACACGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCAGCGGTCGGTATTCTGATCCTGATTTTCAGCGGACGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTCGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACTTGCTTGCCGTCCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCGGTCCCTGTGGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCCGCATTGCCGGCCTGGTTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGCC
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCATACCCGTGCGGCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCACTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAACCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGGGCCGCAACTCGATGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGAAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTAATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGATGCCGGGGGCGAGCGTCTGCTGCTGGCCGGCGATATCGACGTGAACGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTTCGTGCTCACTGGTTGCAGTCGCCACATCACGGCAGCCGAACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTAGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGTGCGGTCCGCCTGCAACTG
GGGACGTTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

34.994

100

0.4

Multiple sequence alignment