Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSYRMG_RS23495 Genome accession   NZ_CP005970
Coordinates   5345052..5345768 (+) Length   238 a.a.
NCBI ID   WP_063613806.1    Uniprot ID   A0AA43IW26
Organism   Pseudomonas syringae UMAF0158     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5340052..5350768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYRMG_RS23475 (PSYRMG_23880) - 5340132..5340755 (+) 624 WP_003368376.1 glutathione S-transferase -
  PSYRMG_RS23480 (PSYRMG_23885) - 5340939..5341871 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYRMG_RS23485 (PSYRMG_23890) - 5341868..5342656 (+) 789 WP_003368378.1 ABC transporter permease -
  PSYRMG_RS23490 (PSYRMG_23895) comA 5342793..5345009 (+) 2217 WP_060708806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYRMG_RS23495 (PSYRMG_23900) exbB 5345052..5345768 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYRMG_RS23500 (PSYRMG_23905) - 5345765..5346196 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYRMG_RS23505 (PSYRMG_23910) lpxK 5346196..5347191 (+) 996 WP_060708807.1 tetraacyldisaccharide 4'-kinase -
  PSYRMG_RS23510 (PSYRMG_23915) - 5347209..5347394 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYRMG_RS23515 (PSYRMG_23920) kdsB 5347391..5348155 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYRMG_RS23520 (PSYRMG_23925) murB 5348190..5349209 (+) 1020 WP_060708808.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.38 Da        Isoelectric Point: 7.9113

>NTDB_id=112712 PSYRMG_RS23495 WP_063613806.1 5345052..5345768(+) (exbB) [Pseudomonas syringae UMAF0158]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=112712 PSYRMG_RS23495 WP_063613806.1 5345052..5345768(+) (exbB) [Pseudomonas syringae UMAF0158]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCGGAC
TCGCCGCTGGGTGAAATCCTGGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCGCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGTTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATCTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment