Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FGK95_RS01895 Genome accession   NZ_LR590625
Coordinates   354352..355422 (+) Length   356 a.a.
NCBI ID   WP_138114053.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 349352..360422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS01880 (SAMEA5186854_00372) amiA 349870..351849 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  FGK95_RS01885 (SAMEA5186854_00373) amiC 351915..353417 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  FGK95_RS01890 (SAMEA5186854_00374) amiD 353417..354343 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  FGK95_RS01895 (SAMEA5186854_00375) amiE 354352..355422 (+) 1071 WP_138114053.1 ABC transporter ATP-binding protein Regulator
  FGK95_RS01900 (SAMEA5186854_00376) amiF 355415..356338 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  FGK95_RS01905 - 356560..357511 (-) 952 Protein_320 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39736.80 Da        Isoelectric Point: 5.6707

>NTDB_id=1127095 FGK95_RS01895 WP_138114053.1 354352..355422(+) (amiE) [Streptococcus canis strain B700072]
MTKENNVILTAKDVVVEFDVRDRVLTVIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHGKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIIGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1127095 FGK95_RS01895 WP_138114053.1 354352..355422(+) (amiE) [Streptococcus canis strain B700072]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTTGATGTGCGGGATCGTGTTTTAACGGT
GATTCGTAACGTCTCACTGGAACTTGTCGAAGGAGAAGTGCTTGCTTTTGTAGGGGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGAATGTTAGAATCCAATGGACGCATTGCCAATGGTTCTATTGTTTATCGTGGACAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCGAAAATCCGTGGTTCAAAGATTGCGACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGTCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGCCATGGCAAGGCAA
AAGAAATGGCGCTTGATTACATGAATAAAGTAGGGATTCCAAACGCTAAAAAACGTTTTGAAGACTACCCATTTGAATAT
TCAGGAGGAATGCGCCAACGTATTGTTATCGCAATTGCTTTAGCCTGTCGTCCAGATATTCTTATCTGTGATGAGCCTAC
AACAGCCCTTGATGTAACCATTCAAGCTCAAATCATTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATCACACATGACTTAGGTGTTGTCGCAAGTATTGCAGACAAAGTGGCTGTCATGTATGCAGGTGAAATTGTCGAA
TTCGGTACCGTTGAAGAAATTTTCTATGACCCACGCCACCCCTATACGTGGAGTCTATTGTCAAGCTTACCGCAATTAGC
TAATGAATCAGGAGAACTTTATTCCATTCCAGGAACTCCTCCATCGCTTTACTCGCCAATTATCGGAGATGCCTTTGCCC
TTCGCTCAGAATATGCTATGGTCTTGGATTTTGAAGAAACACCACCTGCTATTAGTGTTTCTGATACCCATTGGGCTAAA
ACATGGTTATTACACCCCGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAAGAA
GATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.222

100

0.781
  amiE Streptococcus thermophilus LMG 18311

76.111

100

0.77
  amiE Streptococcus thermophilus LMD-9

76.111

100

0.77
  oppD Streptococcus mutans UA159

57.27

94.663

0.542

Multiple sequence alignment