Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGK95_RS01890 Genome accession   NZ_LR590625
Coordinates   353417..354343 (+) Length   308 a.a.
NCBI ID   WP_093999415.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 348417..359343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS01880 (SAMEA5186854_00372) amiA 349870..351849 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  FGK95_RS01885 (SAMEA5186854_00373) amiC 351915..353417 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  FGK95_RS01890 (SAMEA5186854_00374) amiD 353417..354343 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  FGK95_RS01895 (SAMEA5186854_00375) amiE 354352..355422 (+) 1071 WP_138114053.1 ABC transporter ATP-binding protein Regulator
  FGK95_RS01900 (SAMEA5186854_00376) amiF 355415..356338 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  FGK95_RS01905 - 356560..357511 (-) 952 Protein_320 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34830.85 Da        Isoelectric Point: 9.2024

>NTDB_id=1127094 FGK95_RS01890 WP_093999415.1 353417..354343(+) (amiD) [Streptococcus canis strain B700072]
METIDKSKFRFVERDSRASEVIDAPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNADYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127094 FGK95_RS01890 WP_093999415.1 353417..354343(+) (amiD) [Streptococcus canis strain B700072]
ATGGAAACGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTAGAGCCTCCGAAGTAATTGATGCCCCAGCTTA
TTCTTATTGGAAGTCAGTATTCCGTCAATTTTTCTCTAAAAAATCAACGATTTTCATGTTAATGATTTTAGTGACAATTT
TATTGATGAGTTTTATTTACCCAATGTTCGCTAACTATGACTTTGGTGATGTAAGCAATATTAACGACTTTTCAAAACGC
TATATTTGGCCAAATGCTGACTATTGGTTTGGAACAGATAAAAATGGTCAATCCTTATTTGATGGTGTCTGGTATGGTGC
CCGTAACTCTATCTTAATTTCTGTTATTGCAACACTGATTAACGTCACCATTGGGGTTATTTTAGGTGCTATTTGGGGAG
TCTCCAAAGCATTTGATAAAGTTATGATTGAAATTTATAACGTTATTTCAAATATCCCTTCCATGCTCATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGTTTCTGGAATTTGATTTTAGCTTTCTGTATTACTGGCTGGATTGGTGTTGCCTACTC
CATTCGTGTTCAGATTTTGCGTTACCGTGATTTGGAATATAACCTTGCTAGTCAAACCTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTACCTCAATTGGTTTCAGTTATTATGACCATGTTGTCACAAATGCTACCAGTTTATGTATCC
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACTACCACTCCAAGTCTAGGACGTTTGATTGCTAATTATTC
AAGCAATTTAACAACAAATGCCTACCTCTTCTGGATTCCTTTAGTTACTTTGATTTTAGTATCGTTACCATTGTATATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment