Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   FGK91_RS05135 Genome accession   NZ_LR590483
Coordinates   985456..986766 (-) Length   436 a.a.
NCBI ID   WP_023078605.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8318     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 980456..991766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK91_RS05110 (NCTC8318_01016) - 981108..982160 (-) 1053 WP_002989701.1 BMP family protein -
  FGK91_RS05115 (NCTC8318_01017) - 982254..982643 (-) 390 WP_011285547.1 cytidine deaminase -
  FGK91_RS05120 (NCTC8318_01018) - 983248..983841 (-) 594 WP_010922352.1 class I SAM-dependent methyltransferase -
  FGK91_RS05125 (NCTC8318_01019) coaA 984109..985029 (+) 921 WP_010922353.1 type I pantothenate kinase -
  FGK91_RS05130 (NCTC8318_01020) rpsT 985083..985331 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  FGK91_RS05135 (NCTC8318_01021) ciaH 985456..986766 (-) 1311 WP_023078605.1 HAMP domain-containing sensor histidine kinase Regulator
  FGK91_RS05140 (NCTC8318_01022) ciaR 986759..987433 (-) 675 WP_002984519.1 response regulator transcription factor Regulator
  FGK91_RS05145 (NCTC8318_01023) - 987779..990316 (-) 2538 WP_115224583.1 M1 family metallopeptidase -
  FGK91_RS05155 (NCTC8318_01024) phoU 990521..991174 (-) 654 WP_002984514.1 phosphate signaling complex protein PhoU -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50051.53 Da        Isoelectric Point: 9.0837

>NTDB_id=1127049 FGK91_RS05135 WP_023078605.1 985456..986766(-) (ciaH) [Streptococcus pyogenes strain NCTC8318]
MNKLKKDILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKHRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIAKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=1127049 FGK91_RS05135 WP_023078605.1 985456..986766(-) (ciaH) [Streptococcus pyogenes strain NCTC8318]
ATGAATAAATTAAAAAAAGATATTTTATCAGATAACTATAACCATTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACACCGTTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACCGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAACTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGCGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.666

100

0.578

  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516

  ciaH Streptococcus pneumoniae D39

51.37

100

0.516

  ciaH Streptococcus pneumoniae R6

51.37

100

0.516

  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516


Multiple sequence alignment