Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FGL41_RS10540 Genome accession   NZ_LR590482
Coordinates   2253291..2255516 (+) Length   741 a.a.
NCBI ID   WP_231989021.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain NCTC10696     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248291..2260516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL41_RS10525 (NCTC10696_02098) - 2250562..2251290 (+) 729 WP_057024340.1 response regulator transcription factor -
  FGL41_RS10530 (NCTC10696_02099) - 2251277..2252635 (+) 1359 WP_057024341.1 sensor histidine kinase -
  FGL41_RS10535 (NCTC10696_02100) - 2252640..2253155 (-) 516 WP_043046639.1 DUF2062 domain-containing protein -
  FGL41_RS10540 (NCTC10696_02101) comA 2253291..2255516 (+) 2226 WP_231989021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL41_RS10545 (NCTC10696_02102) exbB 2255626..2256261 (+) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FGL41_RS10550 (NCTC10696_02103) - 2256258..2256686 (+) 429 WP_043046643.1 ExbD/TolR family protein -
  FGL41_RS10555 (NCTC10696_02104) lpxK 2256686..2257696 (+) 1011 WP_057024343.1 tetraacyldisaccharide 4'-kinase -
  FGL41_RS10560 (NCTC10696_02105) - 2257721..2257906 (+) 186 WP_003174668.1 Trm112 family protein -
  FGL41_RS10565 (NCTC10696_02106) kdsB 2257903..2258667 (+) 765 WP_057024344.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FGL41_RS10570 (NCTC10696_02107) - 2258667..2259131 (+) 465 WP_057024345.1 low molecular weight protein-tyrosine-phosphatase -
  FGL41_RS10575 (NCTC10696_02108) murB 2259128..2260147 (+) 1020 WP_057024346.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80098.98 Da        Isoelectric Point: 10.6604

>NTDB_id=1126997 FGL41_RS10540 WP_231989021.1 2253291..2255516(+) (comA) [Pseudomonas synxantha strain NCTC10696]
MKTAMLALALGLLALRWLPALPPGAGVLAMLVLALMLLPFRTYPGAFFLFGLSWACISAQWALDDRLRPVLDGQTRWVEG
RVIGLPQQTGTSVRFELADSRSRTARLPKRIRVSWHGGPTVNSGERWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLLAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IALLARHGCWPRTWPWLPWACGLAFAGALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLVLEPL
ASLQPGFWLSFAAVAALVLAFSGRLGPWSAWQVWTRPQWLIAIGLFPLLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLAGGGLLWLAGGALDGLFKGLALLAAQLPAWIPAEVPLGYWLVSLAGAVILLLPKGLPFRFLGWPMLLLAV
FPPRESIPHGQVDVVQLDVGQGQALILRTRHHSLLYDAGPRSGPVDQGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLLAKRVVGGETEGLPGFLGTQPCTSGERWEWDGVAFELWQWAGAIDGNPRSCVLQVEANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPASVLISRGRSNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLRL
GTFLPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1126997 FGL41_RS10540 WP_231989021.1 2253291..2255516(+) (comA) [Pseudomonas synxantha strain NCTC10696]
ATGAAAACAGCGATGTTGGCCTTGGCGCTGGGGTTACTGGCGTTGCGTTGGTTACCTGCGTTGCCGCCCGGCGCAGGGGT
GTTGGCCATGTTGGTGCTGGCGTTGATGCTGCTGCCTTTTCGCACCTATCCCGGGGCGTTCTTTCTGTTCGGTTTGAGTT
GGGCCTGTATCAGTGCGCAGTGGGCGCTGGATGACCGCTTGCGCCCGGTGCTGGATGGGCAGACGCGCTGGGTCGAAGGG
CGTGTCATCGGCCTGCCGCAACAGACGGGCACGAGCGTGCGCTTCGAACTGGCCGACAGCCGGTCGCGCACTGCGCGGCT
GCCCAAGCGCATTCGCGTGTCCTGGCACGGCGGGCCCACGGTTAACAGCGGGGAGCGCTGGCGCCTGGCATTGACGCTGA
AGCGGCCTGCCGGCCTGCTTAATTTCCACGGGTTTGACCATGAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCCACCGCG
ACCGTGAAGGACGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGACGCTGTCCGACAGCGCCTGCTGGCCGTGGA
TGCCCAGGGCCGCGAGGCGGGCTTGGCTGCATTGGTACTGGGCGACGGTTCCGGGCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATTGGCCTGCTGGCGGGGTTGATCTACGGCTTG
ATCGCTTTGTTGGCGCGCCATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCATTTGCCGG
GGCGTTGGCTTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGAGCTTGCGTCATGGTGGGGCTGGTGTTGCTGT
GGCGTTTGCGCTTTCGTCACTTGGGTGTTTGGTGGCCGTTGTTGCTGGCGCTGAACGCTGTGCTGGTGCTTGAGCCCCTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCAGCGCTGGTCCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGCCTGGCAGGTCTGGACGCGTCCCCAGTGGTTGATCGCCATTGGTTTGTTCCCGTTGCTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGTGCACCCGTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTACCCCTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGCGGGCGGAGGTTTGCTGTGGTTGGCCGGTGGTGCGCTGGACGGCTTGTT
CAAGGGCCTGGCGCTGTTGGCCGCGCAACTGCCGGCCTGGATACCGGCCGAAGTACCTTTGGGCTATTGGCTGGTGAGCC
TGGCCGGCGCAGTGATTTTGCTATTGCCCAAGGGCCTCCCGTTTCGGTTTTTGGGCTGGCCCATGCTGTTGTTGGCGGTG
TTTCCACCCAGGGAGTCGATACCCCATGGGCAGGTGGACGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCCCTGATCCT
GCGCACTCGCCATCACTCCTTGCTTTATGATGCCGGGCCCCGGTCGGGGCCTGTCGACCAGGGGGCGCGGGTTGTCTTGC
CGTCGTTGAAAAAGCTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCTGATGCCGATCATGCCGGTGGTGCG
GCGGCAGTGGCCCGGGGGCTGCTCGCCAAGCGCGTGGTGGGCGGCGAAACCGAAGGCCTGCCAGGGTTTCTCGGTACCCA
GCCCTGTACCAGCGGCGAGCGGTGGGAATGGGATGGCGTGGCCTTTGAACTGTGGCAATGGGCCGGTGCGATTGATGGCA
ATCCCAGGTCCTGCGTACTGCAGGTCGAGGCGAATGGCGAACGCCTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAA
CAGGCATTCCTGGCCTCGCCGCTGGCGGTGCCGACCGATTGGTTGCAGGCCCCGCACCATGGCAGCCGCAGCTCTTCGTC
CTGGCCCTTCCTGCAGCGGCTGGCGCCGGCATCGGTGCTGATCTCCCGCGGGCGCAGCAATGCATTCGGCCATCCTCATC
CACAAGTAATGGAGCGCTATCAGGCCCTGGGCAGTCGGGTATATGACAGTGCTGAACAAGGCGCTGTGCGCCTGCGCCTG
GGAACGTTCCTGCCGCCGACTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.384

96.356

0.572
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382

Multiple sequence alignment