Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FGL41_RS10545 Genome accession   NZ_LR590482
Coordinates   2255626..2256261 (+) Length   211 a.a.
NCBI ID   WP_043046641.1    Uniprot ID   A0A0D0SQV5
Organism   Pseudomonas synxantha strain NCTC10696     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2250626..2261261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL41_RS10530 (NCTC10696_02099) - 2251277..2252635 (+) 1359 WP_057024341.1 sensor histidine kinase -
  FGL41_RS10535 (NCTC10696_02100) - 2252640..2253155 (-) 516 WP_043046639.1 DUF2062 domain-containing protein -
  FGL41_RS10540 (NCTC10696_02101) comA 2253291..2255516 (+) 2226 WP_231989021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL41_RS10545 (NCTC10696_02102) exbB 2255626..2256261 (+) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FGL41_RS10550 (NCTC10696_02103) - 2256258..2256686 (+) 429 WP_043046643.1 ExbD/TolR family protein -
  FGL41_RS10555 (NCTC10696_02104) lpxK 2256686..2257696 (+) 1011 WP_057024343.1 tetraacyldisaccharide 4'-kinase -
  FGL41_RS10560 (NCTC10696_02105) - 2257721..2257906 (+) 186 WP_003174668.1 Trm112 family protein -
  FGL41_RS10565 (NCTC10696_02106) kdsB 2257903..2258667 (+) 765 WP_057024344.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FGL41_RS10570 (NCTC10696_02107) - 2258667..2259131 (+) 465 WP_057024345.1 low molecular weight protein-tyrosine-phosphatase -
  FGL41_RS10575 (NCTC10696_02108) murB 2259128..2260147 (+) 1020 WP_057024346.1 UDP-N-acetylmuramate dehydrogenase -
  FGL41_RS10580 (NCTC10696_02109) - 2260221..2260892 (-) 672 WP_046068609.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22864.07 Da        Isoelectric Point: 7.3615

>NTDB_id=1126998 FGL41_RS10545 WP_043046641.1 2255626..2256261(+) (exbB) [Pseudomonas synxantha strain NCTC10696]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1126998 FGL41_RS10545 WP_043046641.1 2255626..2256261(+) (exbB) [Pseudomonas synxantha strain NCTC10696]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTAGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCGGCTGCGCGGGTGATCCATGAACTGGAGCGTTACAT
CAACGCCCTCGGTACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAACGCGGCGGTACTTGCCGGCGGTATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SQV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872

Multiple sequence alignment